View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16720_high_2 (Length: 737)

Name: NF16720_high_2
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16720_high_2
NF16720_high_2
[»] chr1 (1 HSPs)
chr1 (1-705)||(51151359-51152064)


Alignment Details
Target: chr1 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 1 - 705
Target Start/End: Complemental strand, 51152064 - 51151359
Alignment:
Q  1 atgacattttcagcagatgaatgagaaggagaagggtcaagacccttaggagggaaagttataaggaaaggtgaagaaggtgaagaatgtcttgcaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51152064 atgacattttcagcagatgaatgagaaggagaagggtcaagacccttaggagggaaagttataaggaaaggtgaagaaggtgaagaatgtcttgcaacaa 51151965  T
Q  101 aaagcttaatagcagcagctacagcattcaaagagtgaaaatatttacaatgagcttcagcaagtgcatatcttttctctacagctagtttcagctgacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51151964 aaagcttaatagcagcagctacagcattcaaagagtgaaaatatttacaatgagcttcagcaagtgcatatcttttctctacagctagtttcagctgacg 51151865  T
Q  201 ttttctctctctacaaatagctactacttcctcttcttcctctagttttgaggcaacacaccccatctttaacactaacccttatcttctttggtttttt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51151864 ttttctctctctacaaatagctactacttcctcttcttcctctagttttgaggcaacacaccccatctttaacagtaacccttatcttctttggtttttt 51151765  T
Q  301 cctttagaaaatgaagcaagaaagaaaggctcttgcttgatagattcaggaatgtgttgttgttttctctgacaaaaaggagggaactttcacagacaga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51151764 cctttagaaaatgaagcaagaaagaaaggctcttgcttgatagattcaggaatgtgttgttgttttctctgacaaaaaggagggaactttcacagacaga 51151665  T
Q  401 gagatgaaactttcaaatgggtttctaagaacac-nnnnnnngtttcnnnnnnnaccaagactgagttaaaccatttcctctttgacagaaaatcagcag 499  Q
    ||||||||||||||||||||||||||||||||||        |||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  51151664 gagatgaaactttcaaatgggtttctaagaacacaaaaaaaagtttctttttttaccaagactgagttaaaccatttcctctttgacagaaaatcagcag 51151565  T
Q  500 catcttgtctcaggaagttcaacactactcacaaacaagagcaaggaacataatggttagtaccaagtacataaaaataaatgtagtaattattaatnnn 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  51151564 catcttgtctcaggaagttcaacactactcacaaacaagagcaaggaacataatggttagtaccaagtacataaaaataaatgtagtaattattaataaa 51151465  T
Q  600 nnnntgcagttattagtagtggtttagtgttagtgaaataaactaatccttaaaaactgtaccattagcagaaaatctccacctnnnnnnnctgaaagtt 699  Q
        |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       |||||||||    
T  51151464 aaaatgcagttactagtagtggtttagtgttagtgaaataaactaatccttaaaaactgtaccattagcaaaaaatctccacctaaaaaaactgaaagtt 51151365  T
Q  700 cataac 705  Q
    ||||||    
T  51151364 cataac 51151359  T

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