View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_high_21 (Length: 267)
Name: NF16720_high_21
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 230628 - 230869
Alignment:
| Q |
18 |
aattggttaaatttctggttgaaatctgattccatactagtggtgaatgctttctctaacaagagcatagttccttggcacttaagcaatagatggctta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230628 |
aattggttaaatttctggttgaaatctgattccatactagtggtgaatgctttctctaacaagagcatagttccttggcacttaagcaatagatggctta |
230727 |
T |
|
| Q |
118 |
attgtatgaaacttttagctagcatgaattttgttatatctcatatttttagagaaggaaatcagtgtgctgattccgttgcaaactttggcttaacaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
230728 |
attgtatgaaacttttagctagcatgaattttgttatatctcatatttttagagaaggaaatcagtgtgctgattcccttgcaaactttggcttaacaat |
230827 |
T |
|
| Q |
218 |
tcaagaattgttttcttaggaatctgcttcatccttcatttc |
259 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |
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| T |
230828 |
tcaagaattgttttcttgggaatctgcttcatccttcatttc |
230869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 27842483 - 27842515
Alignment:
| Q |
159 |
catatttttagagaaggaaatcagtgtgctgat |
191 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
27842483 |
catatttatagagaaggaaatcagtgtgctgat |
27842515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 12488256 - 12488497
Alignment:
| Q |
18 |
aattggttaaatttctggttgaaatctgattccatactagtggtgaatgctttctctaacaagagcatagttccttggcacttaagcaatagatggctta |
117 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12488256 |
aattggttaaatttctggttggaatctgactccatactagtggtgaatgctttctctaacaagagcatagttccttggcacttaagcaatagatggctta |
12488355 |
T |
|
| Q |
118 |
attgtatgaaacttttagctagcatgaattttgttatatctcatatttttagagaaggaaatcagtgtgctgattccgttgcaaactttggcttaacaat |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
12488356 |
attgtatgaaactcttagctagcatgaattttgttgtatctcatatttttagagaaggaaatcagtgtgttgattcccttgcaaactttggcttaacaat |
12488455 |
T |
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| Q |
218 |
tcaagaattgttttcttaggaatctgcttcatccttcatttc |
259 |
Q |
| |
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||||| ||||||||||| |||||||||| ||||||||||||| |
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| T |
12488456 |
tcaaggattgttttcttgggaatctgctccatccttcatttc |
12488497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 51657859 - 51657758
Alignment:
| Q |
140 |
catgaattttgttatatctcatatttttagagaaggaaatcagtgtgctgattccgttgcaaactttggcttaacaattcaagaattgttttcttaggaa |
239 |
Q |
| |
|
|||||||||||| || |||||||||| ||| ||||| || || |||||||||||| |||||||| | || || ||| ||| | ||||||||||||||| |
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| T |
51657859 |
catgaattttgtgatttctcatatttatagggaagggaaccaatgtgctgattcccttgcaaacataggtttgacatctcatggtttgttttcttaggaa |
51657760 |
T |
|
| Q |
240 |
tc |
241 |
Q |
| |
|
|| |
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|
| T |
51657759 |
tc |
51657758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 259
Target Start/End: Complemental strand, 19613011 - 19612891
Alignment:
| Q |
139 |
gcatgaattttgttatatctcatatttttagagaaggaaatcagtgtgctgattccgttgcaaactttggcttaacaattcaagaattgttttcttagga |
238 |
Q |
| |
|
||||||||||| | | |||||||| |||||| ||||||| || |||| |||||| ||| ||||||||||||||| | |||| ||||||| ||| ||| |
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| T |
19613011 |
gcatgaattttatggtttctcatatctttagaaaaggaaaccaatgtgttgattctcttggaaactttggcttaaccttgcaaggattgtttacttggga |
19612912 |
T |
|
| Q |
239 |
atctgcttcatccttcatttc |
259 |
Q |
| |
|
||| | | |||||||| |||| |
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| T |
19612911 |
atcagttccatccttcctttc |
19612891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 21851472 - 21851710
Alignment:
| Q |
21 |
tggttaaatttctggttgaaatctgattccatactagtggtgaatgctttctctaacaagagcatagttccttggcacttaagcaatagatggcttaatt |
120 |
Q |
| |
|
||||| ||||| ||||| |||| || ||||| ||||||||||||| || || || | | ||| || |||||||| ||||| | ||||||| || | |
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| T |
21851472 |
tggttgaatttttggttagaatcagactccatgttagtggtgaatgccttttcaaatagtaacattgtgccttggcaattaagtactagatggtccaact |
21851571 |
T |
|
| Q |
121 |
gtatgaaacttttagctagcatgaattttgttatatctcatatttttagagaaggaaatcagtgtgctgattccgttgcaaactttggcttaacaattca |
220 |
Q |
| |
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||||||| |||||| | ||||||||||||| |||||||| || |||||||||||||| || ||||| ||||| |||||||||||||| | |||||||| |
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| T |
21851572 |
gtatgaagcttttaaatggcatgaattttgtaatatctcacatatttagagaaggaaaccaatgtgcagattctcttgcaaactttggcctgacaattca |
21851671 |
T |
|
| Q |
221 |
agaattgttttcttaggaatctgcttcatccttcatttc |
259 |
Q |
| |
|
|| ||||||||||| |||||||||| ||||||||||||| |
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| T |
21851672 |
aggattgttttcttgggaatctgctccatccttcatttc |
21851710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 11072813 - 11072746
Alignment:
| Q |
144 |
aattttgttatatctcatatttttagagaaggaaatcagtgtgctgattccgttgcaaactttggctt |
211 |
Q |
| |
|
||||||||| | | |||||| | ||||||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
11072813 |
aattttgttgtttgtcatatatctagagaaataaaccagtgtgctgattcctttgcaaactttggctt |
11072746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 40543990 - 40543939
Alignment:
| Q |
140 |
catgaattttgttatatctcatatttttagagaaggaaatcagtgtgctgat |
191 |
Q |
| |
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|||||| ||| || ||||||| |||||||| ||||||||||||||||||||| |
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| T |
40543990 |
catgaactttattgtatctcacatttttagggaaggaaatcagtgtgctgat |
40543939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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