View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_high_24 (Length: 239)
Name: NF16720_high_24
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42453820 - 42454042
Alignment:
| Q |
1 |
tacatgatgaaagaattaagacatgcaatatgtgctcaatgcttcactccaaaatggatatggaagctctgctagctacatttaactctttcaatcgatg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453820 |
tacacgatgaaagaattaagacatgcaatatgtgctcaatgcttcactccaaaatggatatggaagctctgctagctacatttaactctttcaatcgatg |
42453919 |
T |
|
| Q |
101 |
ttttattcctcctctcaacgacatcattcaactacaaacacttctaatatctaattcattattctctaccgtaagtaagtgtctaatggtcttaaatatt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453920 |
ttttattcctcctcttaacgacatcattcaactacaaagacttctaatatctaattcattattctctaccgtaagtaagtgtctaatggtcttaaatatt |
42454019 |
T |
|
| Q |
201 |
cacctccattatatgtgtgtatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
42454020 |
cacctccattatatgtgtgtatg |
42454042 |
T |
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