View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_high_25 (Length: 237)
Name: NF16720_high_25
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 26913786 - 26913584
Alignment:
| Q |
18 |
cataagtcttaaattttaaaagcagttttaaaccataaagtagaataactagaaataaatgcacataatgaatgagtattaaagtaggaatatgaaagga |
117 |
Q |
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| T |
26913786 |
cataagtcttaaattttaaaagcagttttaaaccataaagtagaataactagaaataaatgcacataatgaaggaatattaaagtaggaatatgaaagga |
26913687 |
T |
|
| Q |
118 |
aaatgaaacatacgtatatttgctaggaatgttcttaatcataaccgttgtttctttaccatccttctgaaccggaaccaatggaaaaccacctccacta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26913686 |
aaatgaaacatacgtatatttgctaggaatgttcttaatcataaccgttgtttctttaccatccttctgaaccggaaccaatggaaaaccacctccacta |
26913587 |
T |
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| Q |
218 |
ttc |
220 |
Q |
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||| |
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| T |
26913586 |
ttc |
26913584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 220
Target Start/End: Original strand, 3804182 - 3804363
Alignment:
| Q |
53 |
taaagtagaataactagaaataaatgcacataatg--------aatgagtattaaagtaggaatatgaaaggaaaatgaaacatacgtatatttgctagg |
144 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||| ||| ||||||||||| ||||||| |||| |
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| T |
3804182 |
taaagtagaataactagaaataaatgcacataatgaagaagaaaatgcatattaaagaaggaatatgaaagcaaagtgaaacatacgaatatttggtagg |
3804281 |
T |
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| Q |
145 |
-----aatgttctt-aatcataaccgttgtttctttaccatccttctgaaccggaaccaatggaaaaccacctccactattc |
220 |
Q |
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|||||| || ||||||||||||||||||| ||||| || |||||||||| | ||||||||||||||||||||| |
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| T |
3804282 |
aatataatgtttttctatcataaccgttgtttcttcaccatttttgtgaaccggaatcccaggaaaaccacctccactattc |
3804363 |
T |
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