View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_high_28 (Length: 233)
Name: NF16720_high_28
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 34790164 - 34790358
Alignment:
| Q |
23 |
aaactgttgagtgtgaatttgagagagcaagagtgctttatgaaaggcttcttgatcgaacaaagcacttgaaggtatggatgagctatgcagagtttga |
122 |
Q |
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| T |
34790164 |
aaactgttgagtgtgaatttgagagagcaagagtgctttatgaaaggcttcttgatcgaacaaagcacttgaaggtatggatgagctatgcagagtttga |
34790263 |
T |
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| Q |
123 |
agcaacagctatagatgagagtttagacttatcggaacaggaacaaaaggagcgatgccttgttcgtgcgagaagtatgtgatcacagctttaag |
217 |
Q |
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| T |
34790264 |
agcaacagctatagatgagagtttagacttatcggaacaggaacaaaaggagcgatgccttgttcgtgcgagaagtatgtgatcacagctttaag |
34790358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 2288591 - 2288407
Alignment:
| Q |
31 |
gagtgtgaatttgagagagcaagagtgctttatgaaaggcttcttgatcgaacaaagcacttgaaggtatggatgagctatgcagagtttgaagcaacag |
130 |
Q |
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| T |
2288591 |
gagtgtgaatttgagagagcaagagcgctttatgaaaggcttcttgatcgaacaaagcacttgaaggtatggcagagctatgcagagtttgaagcaacag |
2288492 |
T |
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| Q |
131 |
ctatagatgagagtttagacttatcggaacaggaacaaaaggagcgatgccttgttcgtgcgagaagtatgtgatcacagcttta |
215 |
Q |
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| T |
2288491 |
ctatagatgagagtttagaattatcggaacaagaacaaaaggagcagtgccttcagcgtgcgagaagtatgtgatcacagcttta |
2288407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 49275928 - 49275824
Alignment:
| Q |
32 |
agtgtgaatttgagagagcaagagtgctttatgaaaggcttcttgatcgaacaa---agcacttgaaggtatggatgagctatgcagagtttgaagcaac |
128 |
Q |
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||||||||||||||||| ||||||||| ||||||||| ||| | |||| | || |||||||| || ||||||| ||||||||||||||||||||||| |
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| T |
49275928 |
agtgtgaatttgagagaacaagagtgcattatgaaagaattcctaatcgtaaaaagcagcacttggagatatggataagctatgcagagtttgaagcaac |
49275829 |
T |
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| Q |
129 |
agcta |
133 |
Q |
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||||| |
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| T |
49275828 |
agcta |
49275824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 49279490 - 49279390
Alignment:
| Q |
36 |
tgaatttgagagagcaagagtgctttatgaaaggcttcttgatcgaacaaagca---cttgaaggtatggatgagctatgcagagtttgaagcaacagct |
132 |
Q |
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| T |
49279490 |
tgaatttgagagaacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatggataagctatgcagagtttgaagcaacagct |
49279391 |
T |
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| Q |
133 |
a |
133 |
Q |
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| |
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| T |
49279390 |
a |
49279390 |
T |
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