View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16720_high_4 (Length: 562)

Name: NF16720_high_4
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16720_high_4
NF16720_high_4
[»] chr8 (8 HSPs)
chr8 (15-278)||(19495164-19495411)
chr8 (276-397)||(19495432-19495553)
chr8 (151-216)||(21592797-21592862)
chr8 (162-222)||(6001111-6001171)
chr8 (153-214)||(10568602-10568663)
chr8 (153-214)||(45269093-45269154)
chr8 (168-216)||(23595014-23595062)
chr8 (168-216)||(23603936-23603984)
[»] chr1 (9 HSPs)
chr1 (15-278)||(41357372-41357619)
chr1 (393-546)||(41347517-41347670)
chr1 (276-397)||(41357230-41357351)
chr1 (293-546)||(21460730-21460983)
chr1 (276-518)||(21809076-21809318)
chr1 (149-278)||(21460564-21460692)
chr1 (151-270)||(21808928-21809047)
chr1 (153-270)||(27036233-27036349)
chr1 (140-200)||(13309634-13309694)
[»] chr2 (6 HSPs)
chr2 (279-546)||(20388733-20389002)
chr2 (279-547)||(25974893-25975161)
chr2 (149-276)||(25975187-25975314)
chr2 (149-278)||(20388582-20388709)
chr2 (443-547)||(20382733-20382837)
chr2 (162-216)||(22170394-22170448)
[»] chr7 (3 HSPs)
chr7 (279-547)||(20940694-20940962)
chr7 (149-276)||(20940988-20941115)
chr7 (151-216)||(24574019-24574084)
[»] scaffold0012 (2 HSPs)
scaffold0012 (276-547)||(59596-59867)
scaffold0012 (151-266)||(59900-60015)
[»] chr4 (2 HSPs)
chr4 (276-518)||(1928539-1928781)
chr4 (151-270)||(1928810-1928929)
[»] scaffold0265 (2 HSPs)
scaffold0265 (276-518)||(23491-23733)
scaffold0265 (151-270)||(23762-23881)
[»] scaffold0125 (2 HSPs)
scaffold0125 (295-546)||(38946-39197)
scaffold0125 (151-277)||(39238-39364)
[»] chr5 (3 HSPs)
chr5 (276-512)||(21897991-21898227)
chr5 (151-270)||(21898256-21898375)
chr5 (147-217)||(35341434-35341504)
[»] scaffold0093 (2 HSPs)
scaffold0093 (287-506)||(11951-12170)
scaffold0093 (151-270)||(11792-11911)
[»] chr3 (6 HSPs)
chr3 (293-546)||(14678087-14678340)
chr3 (149-277)||(14678379-14678507)
chr3 (145-216)||(51661339-51661410)
chr3 (152-222)||(2928908-2928978)
chr3 (153-214)||(5813821-5813882)
chr3 (151-240)||(19826727-19826816)
[»] scaffold0770 (2 HSPs)
scaffold0770 (337-518)||(6205-6386)
scaffold0770 (168-270)||(6060-6162)
[»] scaffold0029 (2 HSPs)
scaffold0029 (337-518)||(104503-104684)
scaffold0029 (168-270)||(104358-104460)
[»] scaffold0061 (1 HSPs)
scaffold0061 (206-270)||(53917-53981)
[»] scaffold0017 (1 HSPs)
scaffold0017 (206-270)||(144653-144717)
[»] scaffold0281 (1 HSPs)
scaffold0281 (151-240)||(6838-6927)
[»] scaffold0015 (1 HSPs)
scaffold0015 (166-239)||(2350-2423)
[»] scaffold0437 (1 HSPs)
scaffold0437 (162-216)||(14594-14648)
[»] chr6 (2 HSPs)
chr6 (162-222)||(24353523-24353583)
chr6 (147-196)||(9697217-9697266)
[»] scaffold0001 (1 HSPs)
scaffold0001 (146-239)||(26771-26864)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 6e-94; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 19495164 - 19495411
Alignment:
Q  15 atgaatgataacctcttgcttgttcttacaagaaatcagaagcaaaagattaaggttcagcaagttctctcaatgaatatgctctattgcctgtccttca 114  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |                 ||||||    
T  19495164 atgaatgataacctcttgcctgttcttacaagaaatcagaagcaaaagattaaggttcagcaagttctctcaaagcag----------------ccttca 19495247  T
Q  115 aagccccgttcacggggtgatgcaaaatccactgcccaatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaa 214  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19495248 aagccccgttcacggggtgatgcaaaagccactgcccaatgaatatgcacgattggaatgttagaggtattggtaactctgacactcggcttgctttaaa 19495347  T
Q  215 aaatttatttttatcccacaaacctactattatttttgtggcggaaccaatggttagctttgca 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19495348 aaatttatttttatcccacaaacctactattatttttgtggcggaaccaatgtttagctttgca 19495411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 276 - 397
Target Start/End: Original strand, 19495432 - 19495553
Alignment:
Q  276 gcattctataggcgtgtcgaaatattgcataaataatagaggttcgttacttcctaacttgtgggctctgtggggtattgatttaattgcaactgttatt 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19495432 gcattctataggcgtgtcgaaatattgcataaataatagaggttcgttacttcctaacttgtgagctctgtggggtattgatttaattgcaactgttatt 19495531  T
Q  376 tttgtttctgatcaatgcatag 397  Q
    ||||||| ||||||||||||||    
T  19495532 tttgtttatgatcaatgcatag 19495553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 21592797 - 21592862
Alignment:
Q  151 caatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaa 216  Q
    |||||||| | |||||||||||||||||||||||  |||||| ||| |||||| ||||||||||||    
T  21592797 caatgaatttcctctattggaatgttagaggtatcagtaactttgatacttggattgctttaaaaa 21592862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 6001111 - 6001171
Alignment:
Q  162 ctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttat 222  Q
    ||||||||||||||||||||||| ||||| ||||| |||  | ||||||||||||| ||||    
T  6001111 ctctattggaatgttagaggtatcggtaattctgatactcagattgctttaaaaaaattat 6001171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 10568663 - 10568602
Alignment:
Q  153 atgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaa 214  Q
    |||||| | ||||||||||||||||||||||| ||||| ||||| |||  | ||||||||||    
T  10568663 atgaattttctctattggaatgttagaggtatcggtaattctgatactcagattgctttaaa 10568602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 45269154 - 45269093
Alignment:
Q  153 atgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaa 214  Q
    |||||| | ||||||||||||||||||||||| ||||| ||||| |||  | ||||||||||    
T  45269154 atgaattttctctattggaatgttagaggtataggtaattctgatactcagattgctttaaa 45269093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 23595014 - 23595062
Alignment:
Q  168 tggaatgttagaggtattggtaactctgacacttggcttgctttaaaaa 216  Q
    |||||||||||||||||  |||||||||| ||| || ||||||||||||    
T  23595014 tggaatgttagaggtatcagtaactctgatactcggattgctttaaaaa 23595062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 23603936 - 23603984
Alignment:
Q  168 tggaatgttagaggtattggtaactctgacacttggcttgctttaaaaa 216  Q
    |||||||||||||||||  |||||||||| ||| || ||||||||||||    
T  23603936 tggaatgttagaggtatcagtaactctgatactcggattgctttaaaaa 23603984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 6e-94; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 41357619 - 41357372
Alignment:
Q  15 atgaatgataacctcttgcttgttcttacaagaaatcagaagcaaaagattaaggttcagcaagttctctcaatgaatatgctctattgcctgtccttca 114  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |                 ||||||    
T  41357619 atgaatgataacctcttgcctgttcttacaagaaatcagaagcaaaagattaaggttcagcaagttctctcaaagcag----------------ccttca 41357536  T
Q  115 aagccccgttcacggggtgatgcaaaatccactgcccaatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaa 214  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41357535 aagccccgttcacggggtgatgcaaaagccactgcccaatgaatatgcacgattggaatgttagaggtattggtaactctgacactcggcttgctttaaa 41357436  T
Q  215 aaatttatttttatcccacaaacctactattatttttgtggcggaaccaatggttagctttgca 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41357435 aaatttatttttatcccacaaacctactattatttttgtggcggaaccaatgtttagctttgca 41357372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 393 - 546
Target Start/End: Complemental strand, 41347670 - 41347517
Alignment:
Q  393 catagctttggaggtttcttgtttccaatcaactgtttatattgctgcaatttatgctaatacttattatgtgaaacgtcgacaactttgggctaatctt 492  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41347670 catagctttggaggtttcttatttccaatcaactgtttatattgctgcaatttatgctaatacttattatgtgaaacgtcgacaactttgggctaatctt 41347571  T
Q  493 actcactttcaaggatgtttccaaggtccatggttatttatgggagattttaat 546  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41347570 actcaccttcaaggatgtttccaaggtccatggttatttatgggagattttaat 41347517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 276 - 397
Target Start/End: Complemental strand, 41357351 - 41357230
Alignment:
Q  276 gcattctataggcgtgtcgaaatattgcataaataatagaggttcgttacttcctaacttgtgggctctgtggggtattgatttaattgcaactgttatt 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41357351 gcattctataggcgtgtcgaaatattgcataaataatagaggttcgttacttcctaacttgtgagctctgtggggtattgatttaattgcaactgttatt 41357252  T
Q  376 tttgtttctgatcaatgcatag 397  Q
    ||||||| ||||||||||||||    
T  41357251 tttgtttatgatcaatgcatag 41357230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 293 - 546
Target Start/End: Original strand, 21460730 - 21460983
Alignment:
Q  293 cgaaatattgcataaataatagaggttcgttacttcctaacttgtgggctctgtggggtattgatttaattgcaactgttatttttgtttctgatcaatg 392  Q
    ||||||||||||||||| |||||||||| |   ||||||| |||||||| || ||||||| | || | |||||||||||||||||| ||||||| |||||    
T  21460730 cgaaatattgcataaatgatagaggttcttctattcctaatttgtgggcgctttggggtaattatgtgattgcaactgttatttttatttctgaccaatg 21460829  T
Q  393 catagctttggaggtttcttgtttccaatcaactgtttatattgctgcaatttatgctaatacttattatgtgaaacgtcgacaactttgggctaatctt 492  Q
     |||||||||||| ||||||| ||  | |||||||||||| | ||||| ||||||||  ||| ||||||||| ||||| ||  ||||||||||| |||||    
T  21460830 tatagctttggagatttcttgctttaattcaactgtttatttggctgccatttatgcacataattattatgttaaacggcgtgaactttgggctgatctt 21460929  T
Q  493 actcactttcaaggatgtttccaaggtccatggttatttatgggagattttaat 546  Q
    ||| || | |||||||||||||||||||| ||| ||||| |||| |||||||||    
T  21460930 actaacctccaaggatgtttccaaggtccgtggctatttgtgggtgattttaat 21460983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 276 - 518
Target Start/End: Original strand, 21809076 - 21809318
Alignment:
Q  276 gcattctataggcgtgtcgaaatattgcataaataatagaggttcgttacttcctaacttgtgggctctgtggggtattgatttaattgcaactgttatt 375  Q
    |||||| |||||||| || ||||||||||| |||||| ||||| | || ||||| || || |||||||| ||||| | ||| |||||||||||||| |||    
T  21809076 gcattccataggcgtatctaaatattgcattaataattgaggtccttttcttccgaatttatgggctctttggggaaatgaattaattgcaactgtgatt 21809175  T
Q  376 tttgtttctgatcaatgcatagctttggaggtttcttgtttccaatcaactgtttatattgctgcaatttatgctaatacttattatgtgaaacgtcgac 475  Q
    ||||| |||||||||||||| ||||||||| | |||||||  || ||  |||||||||||||||| |||||||||| ||| || |||||||| ||||| |    
T  21809176 tttgtgtctgatcaatgcattgctttggagatctcttgttatcagtcttctgtttatattgctgccatttatgctagtacatactatgtgaagcgtcgtc 21809275  T
Q  476 aactttgggctaatcttactcactttcaaggatgtttccaagg 518  Q
    | |||||||||||||| ||||| || ||||| ||||| |||||    
T  21809276 agctttgggctaatctcactcatttgcaaggctgttttcaagg 21809318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 21460564 - 21460692
Alignment:
Q  149 cccaatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacctactattatt 248  Q
    |||||||||| | ||||||||||||||| | ||||||||||| || || ||| |||||||||||||| |||||||||| || || ||||| |||||||||    
T  21460564 cccaatgaatgttctctattggaatgttcgcggtattggtaattccgatactcggcttgctttaaaa-atttatttttgtcgcataaaccaactattatt 21460662  T
Q  249 tttgtggcggaaccaatggttagctttgca 278  Q
    |||||||||||||| || ||||||||||||    
T  21460663 tttgtggcggaacctatagttagctttgca 21460692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 151 - 270
Target Start/End: Original strand, 21808928 - 21809047
Alignment:
Q  151 caatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacctactattatttt 250  Q
    |||||||||| ||||  ||||||||| ||||||||||||| ||||||||| |   ||||||||||||||||| |||||||||||||||  || | |||||    
T  21808928 caatgaatattctcttctggaatgttcgaggtattggtaattctgacactcgaactgctttaaaaaatttatgtttatcccacaaaccctctctaatttt 21809027  T
Q  251 tgtggcggaaccaatggtta 270  Q
    ||||||||||||||||||||    
T  21809028 tgtggcggaaccaatggtta 21809047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 153 - 270
Target Start/End: Complemental strand, 27036349 - 27036233
Alignment:
Q  153 atgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacctactattatttttg 252  Q
    |||||| | |||||||||||||||||||||||  |||||||||| |||||| |||||||| ||||||||| | | || |||||||||| | | ||||||     
T  27036349 atgaatttcctctattggaatgttagaggtatcagtaactctgatacttggattgcttta-aaaatttatatatgtctcacaaacctattctaattttta 27036251  T
Q  253 tggcggaaccaatggtta 270  Q
    | |||||||| |||||||    
T  27036250 ttgcggaaccgatggtta 27036233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 13309694 - 13309634
Alignment:
Q  140 aatccactgcccaatgaatatgctctattggaatgttagaggtattggtaactctgacact 200  Q
    |||||||||  || ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  13309694 aatccactgatcactgaatatcctctattggaatgttagaggtatcggtaactctgacact 13309634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 3e-77; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 279 - 546
Target Start/End: Original strand, 20388733 - 20389002
Alignment:
Q  279 ttctataggcgtgtcgaaatattgcataaataatagaggttcgttacttcctaacttgtgggctctgtggggtattgatttaattgcaactgttattttt 378  Q
    ||||||||||||| |||||||||||||||||||  ||||| | | |||||||||  ||||||| || ||||||| |||||||||||||||||| |||||     
T  20388733 ttctataggcgtgacgaaatattgcataaataaccgaggtccctcacttcctaatctgtgggcgctatggggtaatgatttaattgcaactgtaattttc 20388832  T
Q  379 gtttctgatcaatgcatagctttggaggtttcttgtttccaatcaactgtttatattgctgcaatttatgcta--atacttattatgtgaaacgtcgaca 476  Q
    |||| ||| ||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| |    
T  20388833 gtttatgaccaatgtatagctttggagatttcttgtttcaattcaactgtttatattgctgcaatttatgcaaatatacttattatgtgaaacgtcgaga 20388932  T
Q  477 actttgggctaatcttactcactttcaaggatgtttccaaggtccatggttatttatgggagattttaat 546  Q
    |||||||| | |||| ||| || || ||||||||||||||||||||||||||| ||||||||||||||||    
T  20388933 actttgggatgatctcactaaccttaaaggatgtttccaaggtccatggttatatatgggagattttaat 20389002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 279 - 547
Target Start/End: Complemental strand, 25975161 - 25974893
Alignment:
Q  279 ttctataggcgtgtcgaaatattgcataaataatagaggttcgttacttcctaacttgtgggctctgtggggtattgatttaattgcaactgttattttt 378  Q
    ||||||||||||| |||||||||||||||||||  ||||| | | |||||||||  |||||||  ||||||||| ||||||||| || |||||||||||     
T  25975161 ttctataggcgtgacgaaatattgcataaataaccgaggtccctcacttcctaatctgtgggcgttgtggggtaatgatttaatggcgactgttattttc 25975062  T
Q  379 gtttctgatcaatgcatagctttggaggtttcttgtttccaatcaactgtttatattgctgcaatttatgctaatacttattatgtgaaacgtcgacaac 478  Q
    |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||| |||||| | |    
T  25975061 gtttctgaccaatgcattgctttggaggtttcttgtttccattcaactgtttatattgctgcgatctatgctaatacttactatgtgaagcgtcgagagc 25974962  T
Q  479 tttgggctaatcttactcactttcaaggatgtttccaaggtccatggttatttatgggagattttaatg 547  Q
    ||||||||  ||| ||||| || ||||| ||||| ||||| |  ||||| | |||||| ||||||||||    
T  25974961 tttgggctgctctcactcatttgcaaggttgttttcaagggctgtggttgtatatgggtgattttaatg 25974893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 25975314 - 25975187
Alignment:
Q  149 cccaatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacctactattatt 248  Q
    |||||||||| | || |||||||||||  ||||||||||||| |||||||||  | |||||||||||||||||||||||||||| ||||| |||||||||    
T  25975314 cccaatgaatgttctttattggaatgtacgaggtattggtaattctgacactcaggttgctttaaaaaatttatttttatcccataaaccaactattatt 25975215  T
Q  249 tttgtggcggaaccaatggttagctttg 276  Q
    ||||||||||||||||||||||||||||    
T  25975214 tttgtggcggaaccaatggttagctttg 25975187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 20388582 - 20388709
Alignment:
Q  149 cccaatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacctactattatt 248  Q
    |||||||||| | ||||||||||||||  ||||||||||||| | ||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  20388582 cccaatgaatgttctctattggaatgtacgaggtattggtaattatgacactcggcttgctttaaaaaatttatttttatcccataaaccaactattatt 20388681  T
Q  249 tttgtggcggaaccaatggttagctttgca 278  Q
    |||||||| ||||  ||| |||||||||||    
T  20388682 tttgtggcagaac--atgtttagctttgca 20388709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 443 - 547
Target Start/End: Original strand, 20382733 - 20382837
Alignment:
Q  443 tttatgctaatacttattatgtgaaacgtcgacaactttgggctaatcttactcactttcaaggatgtttccaaggtccatggttatttatgggagattt 542  Q
    |||||||||||| |||||||||||||||||  |||||||||||| ||||||| ||  | ||||| ||||| ||||| || ||| | ||||| || |||||    
T  20382733 tttatgctaataattattatgtgaaacgtcaccaactttgggctgatcttacacatatgcaaggttgttttcaagggccgtggatttttatcggtgattt 20382832  T
Q  543 taatg 547  Q
    |||||    
T  20382833 taatg 20382837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 22170448 - 22170394
Alignment:
Q  162 ctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaa 216  Q
    |||||||||||||||||||||||  |||||| ||| |||||| ||||||||||||    
T  22170448 ctctattggaatgttagaggtatcagtaactttgatacttggattgctttaaaaa 22170394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 279 - 547
Target Start/End: Complemental strand, 20940962 - 20940694
Alignment:
Q  279 ttctataggcgtgtcgaaatattgcataaataatagaggttcgttacttcctaacttgtgggctctgtggggtattgatttaattgcaactgttattttt 378  Q
    ||||||||||||| ||||||||||||||||| |  | ||||| | |||||||||  |||||||  ||||||||| ||||||| | || |||||||||||     
T  20940962 ttctataggcgtgacgaaatattgcataaatgaccggggttcctcacttcctaatctgtgggcgttgtggggtaatgatttactggcgactgttattttc 20940863  T
Q  379 gtttctgatcaatgcatagctttggaggtttcttgtttccaatcaactgtttatattgctgcaatttatgctaatacttattatgtgaaacgtcgacaac 478  Q
    |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||||| |||||| | |    
T  20940862 gtttctgaccaatgcattgctttggaggtttcttgtttccactcaactgtttatattgctgcgatctatgctaatacctattatgtgaagcgtcgagagc 20940763  T
Q  479 tttgggctaatcttactcactttcaaggatgtttccaaggtccatggttatttatgggagattttaatg 547  Q
    |||||| |  ||| ||||| || ||||| ||||| ||||| || ||||| | |||||| ||||||||||    
T  20940762 tttgggttgctctcactcatttgcaaggttgttttcaagggccgtggttgtatatgggtgattttaatg 20940694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 20941115 - 20940988
Alignment:
Q  149 cccaatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacctactattatt 248  Q
    |||||||||| | || |||||||||||  ||||||||||||| |||||||||  | |||||||||||||||||||||| || || |||||||||||||||    
T  20941115 cccaatgaatgttctttattggaatgtacgaggtattggtaattctgacactcaggttgctttaaaaaatttatttttttctcataaacctactattatt 20941016  T
Q  249 tttgtggcggaaccaatggttagctttg 276  Q
    |||||||| |||||||||||||||||||    
T  20941015 tttgtggctgaaccaatggttagctttg 20940988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 24574084 - 24574019
Alignment:
Q  151 caatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaa 216  Q
    |||||||| | ||| ||||||||||||||||||| ||||| | ||| ||| || ||||||||||||    
T  24574084 caatgaatttcctccattggaatgttagaggtatcggtaattatgatactcggattgctttaaaaa 24574019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 276 - 547
Target Start/End: Complemental strand, 59867 - 59596
Alignment:
Q  276 gcattctataggcgtgtcgaaatattgcataaataatagaggttcgttacttcctaacttgtgggctctgtggggtattgatttaattgcaactgttatt 375  Q
    |||||| |||||||| || ||||||||||| |||||||||||| | || ||||| || || |||| ||| ||||| | ||| |||||||||||||| |||    
T  59867 gcattccataggcgtatctaaatattgcattaataatagaggtccttttcttccgaatttatgggttctttggggcaatgaattaattgcaactgtgatt 59768  T
Q  376 tttgtttctgatcaatgcatagctttggaggtttcttgtttccaatcaactgtttatattgctgcaatttatgctaatacttattatgtgaaacgtcgac 475  Q
    ||||| |||||||||||||| ||||||||| |||||||||  || ||  ||||||||||| |||| |||||||||| ||| || |||||||| |||||||    
T  59767 tttgtgtctgatcaatgcattgctttggagatttcttgttatcagtcttctgtttatattcctgccatttatgctagtacatactatgtgaagcgtcgac 59668  T
Q  476 aactttgggctaatcttactcactttcaaggatgtttccaaggtccatggttatttatgggagattttaatg 547  Q
    | ||||||||| |||| ||||| || ||||||||||| || || || ||| | | |||||||||||||||||    
T  59667 agctttgggctgatctcactcatttgcaaggatgttttcacgggccgtggctttatatgggagattttaatg 59596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 60015 - 59900
Alignment:
Q  151 caatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacctactattatttt 250  Q
    |||||||||| |||| |||||||||| ||||||||||||| ||||||||| |   ||||||||||||||||| |||||||||||||||  |||| |||||    
T  60015 caatgaatattctcttttggaatgttcgaggtattggtaattctgacactcgaactgctttaaaaaatttatgtttatcccacaaaccatctataatttt 59916  T
Q  251 tgtggcggaaccaatg 266  Q
    ||||||||||||||||    
T  59915 tgtggcggaaccaatg 59900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 276 - 518
Target Start/End: Complemental strand, 1928781 - 1928539
Alignment:
Q  276 gcattctataggcgtgtcgaaatattgcataaataatagaggttcgttacttcctaacttgtgggctctgtggggtattgatttaattgcaactgttatt 375  Q
    |||||| |||||||| || ||||||||||| |||||||||||| |  | ||||| || || |||||||| ||||| | |||||||||||||||||| |||    
T  1928781 gcattccataggcgtatctaaatattgcattaataatagaggtcctcttcttccgaatttatgggctctttggggaaatgatttaattgcaactgtgatt 1928682  T
Q  376 tttgtttctgatcaatgcatagctttggaggtttcttgtttccaatcaactgtttatattgctgcaatttatgctaatacttattatgtgaaacgtcgac 475  Q
    ||||| |||||||||||||| ||||||||| |||||||||  || ||  |||||||||||||||| |||||||||| ||| || |||||||| ||||| |    
T  1928681 tttgtgtctgatcaatgcattgctttggagatttcttgttatcagtcttctgtttatattgctgccatttatgctagtacatactatgtgaagcgtcgtc 1928582  T
Q  476 aactttgggctaatcttactcactttcaaggatgtttccaagg 518  Q
    | ||||||||| |||| ||||| || ||||| ||||| |||||    
T  1928581 agctttgggctgatctcactcatttgcaaggctgttttcaagg 1928539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 1928929 - 1928810
Alignment:
Q  151 caatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacctactattatttt 250  Q
    |||||||||| ||||  ||||||||| ||||||||||||||||||||||| |   ||||||||||||||||| |||||||||||||||  || | |||||    
T  1928929 caatgaatattctcttctggaatgttcgaggtattggtaactctgacactcgaactgctttaaaaaatttatgtttatcccacaaaccatctctaatttt 1928830  T
Q  251 tgtggcggaaccaatggtta 270  Q
    ||||| ||||||||||||||    
T  1928829 tgtggtggaaccaatggtta 1928810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 276 - 518
Target Start/End: Complemental strand, 23733 - 23491
Alignment:
Q  276 gcattctataggcgtgtcgaaatattgcataaataatagaggttcgttacttcctaacttgtgggctctgtggggtattgatttaattgcaactgttatt 375  Q
    |||||| |||||||| || ||||||||||| |||||| ||||| | || ||||| || || |||||||| ||||| | ||| |||||||||||||| |||    
T  23733 gcattccataggcgtatctaaatattgcattaataattgaggtccttttcttccgaatttatgggctctttggggaaatgaattaattgcaactgtgatt 23634  T
Q  376 tttgtttctgatcaatgcatagctttggaggtttcttgtttccaatcaactgtttatattgctgcaatttatgctaatacttattatgtgaaacgtcgac 475  Q
    ||||| |||||||||||||| ||||||||| | |||||||  || ||  |||||||||||||||| |||||||||| ||| || |||||||| ||||| |    
T  23633 tttgtgtctgatcaatgcattgctttggagatctcttgttatcagtcttctgtttatattgctgccatttatgctagtacatactatgtgaagcgtcgtc 23534  T
Q  476 aactttgggctaatcttactcactttcaaggatgtttccaagg 518  Q
    | |||||||||||||| ||||| || ||||| ||||| |||||    
T  23533 agctttgggctaatctcactcatttgcaaggctgttttcaagg 23491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 23881 - 23762
Alignment:
Q  151 caatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacctactattatttt 250  Q
    |||||||||| ||||  ||||||||| ||||||||||||| ||||||||| |   ||||||||||||||||| |||||||||||||||  || | |||||    
T  23881 caatgaatattctcttctggaatgttcgaggtattggtaattctgacactcgaactgctttaaaaaatttatgtttatcccacaaaccctctctaatttt 23782  T
Q  251 tgtggcggaaccaatggtta 270  Q
    ||||||||||||||||||||    
T  23781 tgtggcggaaccaatggtta 23762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 295 - 546
Target Start/End: Complemental strand, 39197 - 38946
Alignment:
Q  295 aaatattgcataaataatagaggttcgttacttcctaacttgtgggctctgtggggtattgatttaattgcaactgttatttttgtttctgatcaatgca 394  Q
    ||||||||||||||| | |||||| | |   ||||||| |||||||| || ||||||| |||| | |||||||||||||||||||||||||  ||||| |    
T  39197 aaatattgcataaatgacagaggtacttctattcctaatttgtgggcactttggggtaatgatgtgattgcaactgttatttttgtttctgtccaatgta 39098  T
Q  395 tagctttggaggtttcttgtttccaatcaactgtttatattgctgcaatttatgctaatacttattatgtgaaacgtcgacaactttgggctaatcttac 494  Q
    ||||||||||| ||||||| ||  | |||||||||||| | ||||| ||||||||  ||| ||||||||| ||||| ||  ||||||||||| |||||||    
T  39097 tagctttggagatttcttgctttaattcaactgtttatttggctgccatttatgcacataattattatgttaaacggcgtgaactttgggctgatcttac 38998  T
Q  495 tcactttcaaggatgtttccaaggtccatggttatttatgggagattttaat 546  Q
    | || | |||||||||||||||||||| ||| | ||| |||| |||||||||    
T  38997 taacctccaaggatgtttccaaggtccgtggctttttgtgggtgattttaat 38946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 151 - 277
Target Start/End: Complemental strand, 39364 - 39238
Alignment:
Q  151 caatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacctactattatttt 250  Q
    |||||||| | ||||||||||||||| | ||||||||||| || || ||| ||||||||||||||||||||||||| || || ||||| |||||||||||    
T  39364 caatgaatgttctctattggaatgttcgcggtattggtaattccgatactcggcttgctttaaaaaatttatttttgtcgcataaaccaactattatttt 39265  T
Q  251 tgtggcggaaccaatggttagctttgc 277  Q
    |||||||||||||||||||||||||||    
T  39264 tgtggcggaaccaatggttagctttgc 39238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 276 - 512
Target Start/End: Complemental strand, 21898227 - 21897991
Alignment:
Q  276 gcattctataggcgtgtcgaaatattgcataaataatagaggttcgttacttcctaacttgtgggctctgtggggtattgatttaattgcaactgttatt 375  Q
    |||||| |||||||| || ||||||||||| |||||||||||| |  |  |||| || || |||||||| ||||| | ||| |||||||||||||| |||    
T  21898227 gcattccataggcgtatctaaatattgcattaataatagaggtcctctttttccgaatttatgggctctttggggaaatgaattaattgcaactgtgatt 21898128  T
Q  376 tttgtttctgatcaatgcatagctttggaggtttcttgtttccaatcaactgtttatattgctgcaatttatgctaatacttattatgtgaaacgtcgac 475  Q
    ||||| |||||||||||||| ||||||||| |||||||||  || ||  |||||||||||||||| |||||||||| ||| || |||||||| ||||| |    
T  21898127 tttgtgtctgatcaatgcatcgctttggagatttcttgttatcagtcttctgtttatattgctgccatttatgctagtacatactatgtgaagcgtcgtc 21898028  T
Q  476 aactttgggctaatcttactcactttcaaggatgttt 512  Q
    | ||||||||| |||| ||| | || ||||| |||||    
T  21898027 agctttgggctgatctcacttatttgcaaggctgttt 21897991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 21898375 - 21898256
Alignment:
Q  151 caatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacctactattatttt 250  Q
    |||||||||| ||||  ||||||||| ||||||||||||| ||||||||| |   | ||||||||||||||| |||||||||||||||  || | |||||    
T  21898375 caatgaatattctcttctggaatgttcgaggtattggtaattctgacactcgaactactttaaaaaatttatgtttatcccacaaaccctctctaatttt 21898276  T
Q  251 tgtggcggaaccaatggtta 270  Q
    ||||||||||||||||||||    
T  21898275 tgtggcggaaccaatggtta 21898256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 35341434 - 35341504
Alignment:
Q  147 tgcccaatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaa 217  Q
    |||||||||||| | |||||||||||| |||||||||| |||||||||||  || |  |||||||||||||    
T  35341434 tgcccaatgaattttctctattggaatattagaggtatcggtaactctgatgctcgaattgctttaaaaaa 35341504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 287 - 506
Target Start/End: Original strand, 11951 - 12170
Alignment:
Q  287 gcgtgtcgaaatattgcataaataatagaggttcgttacttcctaacttgtgggctctgtggggtattgatttaattgcaactgttatttttgtttctga 386  Q
    ||||||| ||||||||||  |||||||||||| |  | ||||| |  || |||||||| ||||||| |||||||||||  |||||||||||||| |||||    
T  11951 gcgtgtctaaatattgcactaataatagaggtcctcttcttccgagtttatgggctctttggggtaatgatttaattgtcactgttatttttgtgtctga 12050  T
Q  387 tcaatgcatagctttggaggtttcttgtttccaatcaactgtttatattgctgcaatttatgctaatacttattatgtgaaacgtcgacaactttgggct 486  Q
    ||||||||| ||||||||| |||||||||  |||||| |||| |||||||| || ||||||||||  ||| | |||||||| | ||||||||||||||||    
T  12051 tcaatgcattgctttggagatttcttgttatcaatcatctgtatatattgccgccatttatgctagaactaactatgtgaagcatcgacaactttgggct 12150  T
Q  487 aatcttactcactttcaagg 506  Q
     |||| ||||| || |||||    
T  12151 gatctcactcatttacaagg 12170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 151 - 270
Target Start/End: Original strand, 11792 - 11911
Alignment:
Q  151 caatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacctactattatttt 250  Q
    |||||||||| || | |||||||||||||||||||||||||||||||||| |   || |||||||||  | | |||||||||||||||  || |||||||    
T  11792 caatgaatattcttttttggaatgttagaggtattggtaactctgacactagaactggtttaaaaaaaatttgtttatcccacaaaccctctcttatttt 11891  T
Q  251 tgtggcggaaccaatggtta 270  Q
    ||||| ||||||||||||||    
T  11892 tgtggtggaaccaatggtta 11911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 293 - 546
Target Start/End: Complemental strand, 14678340 - 14678087
Alignment:
Q  293 cgaaatattgcataaataatagaggttcgttacttcctaacttgtgggctctgtggggtattgatttaattgcaactgttatttttgtttctgatcaatg 392  Q
    |||||||||||| |||| | |||||| | |   ||||||| |||||||| || ||||||| |||| | |||||||||||||||||||||||||| |||||    
T  14678340 cgaaatattgcacaaatgacagaggtacttctattcctaatttgtgggcgctctggggtactgatgtgattgcaactgttatttttgtttctgaccaatg 14678241  T
Q  393 catagctttggaggtttcttgtttccaatcaactgtttatattgctgcaatttatgctaatacttattatgtgaaacgtcgacaactttgggctaatctt 492  Q
     |||||||||||| ||||||| ||  | |||||||||||| | ||||| ||||||||  ||| ||| ||||| ||||| ||  |||||| |||| |||||    
T  14678240 tatagctttggagatttcttgctttaattcaactgtttatttggctgctatttatgcacataattactatgttaaacggcgtgaactttaggctgatctt 14678141  T
Q  493 actcactttcaaggatgtttccaaggtccatggttatttatgggagattttaat 546  Q
    ||| || |||||||||| ||||||||||| ||| | ||| |||| || ||||||    
T  14678140 actaaccttcaaggatgcttccaaggtccgtggctttttgtgggggactttaat 14678087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 149 - 277
Target Start/End: Complemental strand, 14678507 - 14678379
Alignment:
Q  149 cccaatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacctactattatt 248  Q
    |||||||||||| ||||||| ||||||| | | ||||||||| || || ||| ||||||||||||||||||||||||| || || ||||| |||||||||    
T  14678507 cccaatgaatattctctattagaatgttcgcgttattggtaattccgatactcggcttgctttaaaaaatttatttttgtcgcataaaccaactattatt 14678408  T
Q  249 tttgtggcggaaccaatggttagctttgc 277  Q
    |||||||||||||||||||||||||||||    
T  14678407 tttgtggcggaaccaatggttagctttgc 14678379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 51661339 - 51661410
Alignment:
Q  145 actgcccaatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaa 216  Q
    ||||| |||||||| ||||| ||||||||||||||||||| ||||| | ||| ||| || ||||||||||||    
T  51661339 actgctcaatgaatttgctccattggaatgttagaggtatcggtaattatgatactcggattgctttaaaaa 51661410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 2928978 - 2928908
Alignment:
Q  152 aatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttat 222  Q
    ||||||| | ||||||||||||||||||||||| | ||| ||||| ||| || |||||||||| |||||||    
T  2928978 aatgaatttcctctattggaatgttagaggtatcgataattctgatactcggattgctttaaagaatttat 2928908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 5813882 - 5813821
Alignment:
Q  153 atgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaa 214  Q
    |||||| | |||||||||||||||||||||||  |||| ||||| |||||| ||||||||||    
T  5813882 atgaattttctctattggaatgttagaggtatcagtaattctgatacttggattgctttaaa 5813821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 19826816 - 19826727
Alignment:
Q  151 caatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaaccta 240  Q
    |||||||| | |||||||||| ||||||||||||   ||| ||||| ||| || |||||||||| ||||||| ||| || || |||||||    
T  19826816 caatgaattttctctattggattgttagaggtatcattaattctgatactcggattgctttaaagaatttatatttgtctcataaaccta 19826727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 337 - 518
Target Start/End: Original strand, 6205 - 6386
Alignment:
Q  337 tgggctctgtggggtattgatttaattgcaactgttatttttgtttctgatcaatgcatagctttggaggtttcttgtttccaatcaactgtttatattg 436  Q
    |||||||| ||||| | |||||| ||||||||||| |||||| | |||||||||||||| ||||||||| |||||||||  || ||  ||||||||||||    
T  6205 tgggctctttggggaaatgatttgattgcaactgtgatttttatatctgatcaatgcattgctttggagatttcttgttatcagtcttctgtttatattg 6304  T
Q  437 ctgcaatttatgctaatacttattatgtgaaacgtcgacaactttgggctaatcttactcactttcaaggatgtttccaagg 518  Q
    |||| |||||||||| |||  | |||| ||| ||||| || ||||||||| |||| || || || ||||| ||||| |||||    
T  6305 ctgccatttatgctagtacacactatgagaagcgtcgtcagctttgggctgatctcacgcatttgcaaggctgttttcaagg 6386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 6060 - 6162
Alignment:
Q  168 tggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacctactattatttttgtggcggaaccaatgg 267  Q
    ||||||||| ||||||||||||| ||||||||| |   ||||||||||||||||| |||||||||||||||  || | ||||||||||||||||||||||    
T  6060 tggaatgttcgaggtattggtaattctgacactcgaactgctttaaaaaatttatgtttatcccacaaaccatctctaatttttgtggcggaaccaatgg 6159  T
Q  268 tta 270  Q
    |||    
T  6160 tta 6162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 337 - 518
Target Start/End: Original strand, 104503 - 104684
Alignment:
Q  337 tgggctctgtggggtattgatttaattgcaactgttatttttgtttctgatcaatgcatagctttggaggtttcttgtttccaatcaactgtttatattg 436  Q
    |||||||| ||||| | |||||| ||||||||||| |||||| | |||||||||||||| ||||||||| |||||||||  || ||  ||||||||||||    
T  104503 tgggctctttggggaaatgatttgattgcaactgtgatttttatatctgatcaatgcattgctttggagatttcttgttatcagtcttctgtttatattg 104602  T
Q  437 ctgcaatttatgctaatacttattatgtgaaacgtcgacaactttgggctaatcttactcactttcaaggatgtttccaagg 518  Q
    |||| |||||||||| |||  | |||| ||| ||||| || ||||||||| |||| || || || ||||| ||||| |||||    
T  104603 ctgccatttatgctagtacacactatgagaagcgtcgtcagctttgggctgatctcacgcatttgcaaggctgttttcaagg 104684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 104358 - 104460
Alignment:
Q  168 tggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacctactattatttttgtggcggaaccaatgg 267  Q
    ||||||||| ||||||||||||| ||||||||| |   ||||||||||||||||| |||||||||||||||  || | ||||||||||||||||||||||    
T  104358 tggaatgttcgaggtattggtaattctgacactcgaactgctttaaaaaatttatgtttatcccacaaaccatctctaatttttgtggcggaaccaatgg 104457  T
Q  268 tta 270  Q
    |||    
T  104458 tta 104460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 53981 - 53917
Alignment:
Q  206 tgctttaaaaaatttatttttatcccacaaacctactattatttttgtggcggaaccaatggtta 270  Q
    ||||||||||||||||| |||||||||||||||  || | |||||||||||||||||||||||||    
T  53981 tgctttaaaaaatttatgtttatcccacaaaccctctctaatttttgtggcggaaccaatggtta 53917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 144653 - 144717
Alignment:
Q  206 tgctttaaaaaatttatttttatcccacaaacctactattatttttgtggcggaaccaatggtta 270  Q
    ||||||||||||||||| |||||||||||||||  || | |||||||||||||||||||||||||    
T  144653 tgctttaaaaaatttatgtttatcccacaaaccctctctaatttttgtggcggaaccaatggtta 144717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 6838 - 6927
Alignment:
Q  151 caatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaaccta 240  Q
    |||||||||| || |||||||||||||||||||| |||||  |||| ||| | ||||||||||| ||||| | ||| || ||||||||||    
T  6838 caatgaatatcctttattggaatgttagaggtatcggtaatgctgatactcgtcttgctttaaagaatttttatttgtctcacaaaccta 6927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 2423 - 2350
Alignment:
Q  166 attggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacct 239  Q
    |||||||||||||||||||  |||| |||||| ||||| |||||||||| ||||||| ||| || |||||||||    
T  2423 attggaatgttagaggtatccgtaattctgacgcttggattgctttaaagaatttatatttgtctcacaaacct 2350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 14648 - 14594
Alignment:
Q  162 ctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaa 216  Q
    |||||||||||||||||||||||  |||||| ||| |||||| ||||||||||||    
T  14648 ctctattggaatgttagaggtatcagtaactttgatacttggattgctttaaaaa 14594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 24353583 - 24353523
Alignment:
Q  162 ctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttat 222  Q
    ||||||||||||||||||||||| ||||| | ||| ||| || || |||||||||||||||    
T  24353583 ctctattggaatgttagaggtatcggtaattttgatactcggattactttaaaaaatttat 24353523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 9697266 - 9697217
Alignment:
Q  147 tgcccaatgaatatgctctattggaatgttagaggtattggtaactctga 196  Q
    |||||||||| | | |||||||||||| |||||||||| |||||||||||    
T  9697266 tgcccaatgatttttctctattggaatattagaggtatcggtaactctga 9697217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 26771 - 26864
Alignment:
Q  146 ctgcccaatgaatatgctctattggaatgttagaggtattggtaactctgacacttggcttgctttaaaaaatttatttttatcccacaaacct 239  Q
    |||| ||||||||||  |||| ||||||||| |||||||||||||||| || ||| |  || | ||||||||| |||||||  | |||||||||    
T  26771 ctgctcaatgaatattttctactggaatgttcgaggtattggtaactccgatactcgcgttacattaaaaaatctatttttgacgcacaaacct 26864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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