View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_high_7 (Length: 456)
Name: NF16720_high_7
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 37325767 - 37326189
Alignment:
| Q |
19 |
ctcacacattcatcactaagcgttgaaatggtggagaagtgcaaaacgacaccgtcaaaacaaaccaaacctagtaaacgcgaggttgttttatccctct |
118 |
Q |
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| T |
37325767 |
ctcacacattcatcactaagcgttgaaatggtggagaagtgcaaaacgacaccgtcaaaacaaaccaaacctagtaaacgcgatgtcgttttatccctct |
37325866 |
T |
|
| Q |
119 |
cagcttctcaacaaaccgaaaacatgacgcctagcaacgaagaaatgcagttgatcgttcacgagcagaaggagaattacgtcaccgagtttcgtaactt |
218 |
Q |
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| T |
37325867 |
cagcttctcaacaaacggaaaacatgacgcctagcaacgaagaaatgcagttgatcgttcacgagcagaaggagaattacgtcaccgagtttcgtaactt |
37325966 |
T |
|
| Q |
219 |
cttagatgacgcttggtacaccgtcagtgttacattcgaaggaaatgaatctctgcgagtcaagtacgnnnnnnncactgatgagattgataatttgttc |
318 |
Q |
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| T |
37325967 |
cttagatgacgcttggtacaccgtcagtgttacattcgaaggaaatgaatctctgcgagtcaagtacgaaaaaaacactgatgagattgataatttgttc |
37326066 |
T |
|
| Q |
319 |
gaacctgggtttttcaactccatggaagaccttcaagagtttgagacacggttcagacctctttctgttcaggttcaagatcaccagtgtcgggagctgg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37326067 |
gaacctgggtttttcaactccatggaagaccttcaagagtttgagacacggttcagacctctttctgttcaggttcaagatcaccagtgtcgggagctgg |
37326166 |
T |
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| Q |
419 |
ttccaggtgttagggtttgtgct |
441 |
Q |
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||||||||||||||||||||||| |
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| T |
37326167 |
ttccaggtgttagggtttgtgct |
37326189 |
T |
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