View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_low_1 (Length: 980)
Name: NF16720_low_1
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 389 - 963
Target Start/End: Complemental strand, 21981464 - 21980890
Alignment:
| Q |
389 |
tttataatgacatacaatacatatcatttaagatatttaactacttatttgtatgtatcagattattgagctctgtggacttaagggagagaccttgaaa |
488 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| |||| ||||||| || ||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
21981464 |
tttataatgacatacaatacacatcatttaagatattcaactgcttatttatacgtatcagattattgaactctgtggacttaagggagagactttgaaa |
21981365 |
T |
|
| Q |
489 |
agggcacacaataccatcgatgagtatgctgaccgcggtctgcgttccttggctgttggtttccaggtgattaaagggtctaaatatgagtagccatgtt |
588 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| |
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| T |
21981364 |
agggcacacaaaaccatcgatgagtatgctgagcgcggtctgcgttccttggctgttggtttccaggtaattaaagggtctaaatacaagtggccatgtt |
21981265 |
T |
|
| Q |
589 |
tatatttctaaaaagaataataaatagattttctaacaaatgcacatgattactttctattttggcagactgtttcagaaaagaccaaggagagtgcagg |
688 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21981264 |
tatatttctaaaaagaataataaatattttttctaacaaatgcacatgattactttctattttggcagactgtttcagaaaagaccaaggagagtgcagg |
21981165 |
T |
|
| Q |
689 |
agaaccatgggtgttcttgggtctcttacctctctttgacccgcctagacatgacagtgccgagactattcgtcgcgctcttgacctcggtgtcaatgtt |
788 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21981164 |
agaaccatgggtgttcttgggtctcttacccctctttgacccgcctagacatgacagtgctgagactattcgtcgcgctcttgacctcggtgtcaatgtt |
21981065 |
T |
|
| Q |
789 |
aagatgatcactggcgatcaacttgccattggaaaagaaactggtcgcagactcggaatgggaaccaacatgtacccttcatcctcccttcttggccaat |
888 |
Q |
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| T |
21981064 |
aagatgatcactggcgatcaacttgccattggaaaagaaactggtcgcagacttggaatgggaaccaacatgtacccttcatcctcccttcttggccaat |
21980965 |
T |
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| Q |
889 |
ccaatgatgcagccattgcatcaattccaattgatgaacttattgagaaggctgatggatttgctggagtcttcc |
963 |
Q |
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| T |
21980964 |
ccaatgatgcagccattgcatcaattccaattgatgaacttattgagaaggctgatggatttgctggagtcttcc |
21980890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 385
Target Start/End: Complemental strand, 21981865 - 21981494
Alignment:
| Q |
15 |
atgaacaaggacagtgttgttctatatgcagcaagagcttcacgagttgaaaaccaggatgccattgatgcatcaattgtgaatatgttgagcgatccca |
114 |
Q |
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| T |
21981865 |
atgaacaaggacagtgttgttctatatgcagcaagagcttcacgagtcgaaaaccaggatgccattgatgcatcaattgtgaatatgttgagcgatccca |
21981766 |
T |
|
| Q |
115 |
aggaggtatttattatgatttacgttcttgtatgaaatattatttgtatccttgtaaagtatgcaaaatggcttaacattctaact-ggctgttactatg |
213 |
Q |
| |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |
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| T |
21981765 |
aggaggtatttattataatttacattcttgtatgaaatattatttgtatccttgtaaagtatgcaaaatggcttaacattcgaactgggctattactatg |
21981666 |
T |
|
| Q |
214 |
aaatgttaggcaagagcaggaatcactgaggtgcatttcttaccctttaatcctgtggacaagcgcactgctattacctttattgacggaaatggcaact |
313 |
Q |
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| T |
21981665 |
acatgttaggcaagagcaggaatcactgaggtgcatttcttgccctttaatcctgtggacaagcgcacagctattacctttattgacggaaatggcaact |
21981566 |
T |
|
| Q |
314 |
ggcacagaagcagcaaaggtgctcctgaacaagtaagccaatagatcatatgccttgatattccattcaaaa |
385 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
21981565 |
ggcacagaagcagcaaaggtgctcctgaacaagtaagccaatagattatatgccttgatataacattcaaaa |
21981494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 664 - 963
Target Start/End: Complemental strand, 45198044 - 45197745
Alignment:
| Q |
664 |
cagaaaagaccaaggagagtgcaggagaaccatgggtgttcttgggtctcttacctctctttgacccgcctagacatgacagtgccgagactattcgtcg |
763 |
Q |
| |
|
||||||| | |||||||||| |||||| ||| ||| ||| | ||||| || ||||||||||| || || || ||||||||||| || || ||| | || |
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| T |
45198044 |
cagaaaaaagcaaggagagttcaggaggaccgtggacgtttgtcggtctattgcctctctttgatcctccaaggcatgacagtgcagaaaccattagacg |
45197945 |
T |
|
| Q |
764 |
cgctcttgacctcggtgtcaatgttaagatgatcactggcgatcaacttgccattggaaaagaaactggtcgcagactcggaatgggaaccaacatgtac |
863 |
Q |
| |
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|| || | ||||| || || ||||| ||||| ||||| ||||| || || ||||| || ||||| ||||| || || || ||||||| |||||||| |
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| T |
45197944 |
ggccctcaatctcggagtaaacgttaaaatgattactggtgatcagctagctattggcaaggaaaccggtcgtaggctgggcatgggaagtaacatgtat |
45197845 |
T |
|
| Q |
864 |
ccttcatcctcccttcttggccaatccaatgatgcagccattgcatcaattccaattgatgaacttattgagaaggctgatggatttgctggagtcttcc |
963 |
Q |
| |
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|||||||||||||| |||||| | ||| |||||| | ||||| || |||| | ||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
45197844 |
ccttcatcctccctccttggcgagcacaaggatgcatcaattgcttcgcttccggtcgatgagcttattgagaaggctgatggatttgctggtgtcttcc |
45197745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 1e-80; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 655 - 963
Target Start/End: Complemental strand, 48437485 - 48437177
Alignment:
| Q |
655 |
agactgtttcagaaaagaccaaggagagtgcaggagaaccatgggtgttcttgggtctcttacctctctttgacccgcctagacatgacagtgccgagac |
754 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||| ||| ||||||||| | || ||||||||||| || || ||||| ||||| ||||| |
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| T |
48437485 |
agactgtttcagaaaagaccaaggagagtgaaggagactcatgggagtttttgggtctcatgccactctttgaccctccaaggcatgatagtgctgagac |
48437386 |
T |
|
| Q |
755 |
tattcgtcgcgctcttgacctcggtgtcaatgttaagatgatcactggcgatcaacttgccattggaaaagaaactggtcgcagactcggaatgggaacc |
854 |
Q |
| |
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||||| || ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||| |
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| T |
48437385 |
cattcgacgtgctcttgaccttggtgttaatgttaagatgatcactggtgatcaacttgccattggaaaagaaaccggtcgcagacttggaatgggcacc |
48437286 |
T |
|
| Q |
855 |
aacatgtacccttcatcctcccttcttggccaatccaatgatgcagccattgcatcaattccaattgatgaacttattgagaaggctgatggatttgctg |
954 |
Q |
| |
|
||||||||||||||||| || ||||| || | || || | ||||||||||| || |||||||||||||| ||||||||||||||||||||||| | |
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| T |
48437285 |
aacatgtacccttcatcatctcttctcggtgataacacagaccctgccattgcatccatcccaattgatgaactcattgagaaggctgatggatttgccg |
48437186 |
T |
|
| Q |
955 |
gagtcttcc |
963 |
Q |
| |
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||||||||| |
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| T |
48437185 |
gagtcttcc |
48437177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 444 - 545
Target Start/End: Complemental strand, 48437818 - 48437717
Alignment:
| Q |
444 |
tatcagattattgagctctgtggacttaagggagagaccttgaaaagggcacacaataccatcgatgagtatgctgaccgcggtctgcgttccttggctg |
543 |
Q |
| |
|
|||||||||||||| || |||| |||||||||||||| ||||||| ||| ||||| | ||| ||| ||| |||||| |||||||||||||| ||||||| |
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|
| T |
48437818 |
tatcagattattgaactttgtgagcttaagggagagactttgaaaaaggctcacaaaatcattgatcagtttgctgaacgcggtctgcgttcattggctg |
48437719 |
T |
|
| Q |
544 |
tt |
545 |
Q |
| |
|
|| |
|
|
| T |
48437718 |
tt |
48437717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 220 - 350
Target Start/End: Complemental strand, 48438241 - 48438111
Alignment:
| Q |
220 |
taggcaagagcaggaatcactgaggtgcatttcttaccctttaatcctgtggacaagcgcactgctattacctttattgacggaaatggcaactggcaca |
319 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||| ||||| |||| || || || || ||||||| ||||| | | || || ||||| | |
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| T |
48438241 |
taggcaagagcaggaatcactgaggttcatttcttgcccttcaatccagtgggtaaacgtacagcgattacctacattgatagtgaaggaaattggcata |
48438142 |
T |
|
| Q |
320 |
gaagcagcaaaggtgctcctgaacaagtaag |
350 |
Q |
| |
|
|| ||||||| ||||||||||| |||||||| |
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|
| T |
48438141 |
gatgcagcaagggtgctcctgagcaagtaag |
48438111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 723 - 802
Target Start/End: Complemental strand, 53076070 - 53075991
Alignment:
| Q |
723 |
tttgacccgcctagacatgacagtgccgagactattcgtcgcgctcttgacctcggtgtcaatgttaagatgatcactgg |
802 |
Q |
| |
|
|||||||| ||||| ||||||||||| || |||||||| | |||||| | || |||||||||||||||||||| ||||| |
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|
| T |
53076070 |
tttgacccacctaggcatgacagtgctgaaactattcggagagctcttcatcttggtgtcaatgttaagatgattactgg |
53075991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 725 - 802
Target Start/End: Original strand, 28626592 - 28626669
Alignment:
| Q |
725 |
tgacccgcctagacatgacagtgccgagactattcgtcgcgctcttgacctcggtgtcaatgttaagatgatcactgg |
802 |
Q |
| |
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|||||| ||||| ||||||||||| || |||||||| | |||||| | || |||||||||||||||||||| ||||| |
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|
| T |
28626592 |
tgacccacctaggcatgacagtgctgaaactattcggagagctcttcatcttggtgtcaatgttaagatgattactgg |
28626669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 804 - 862
Target Start/End: Complemental strand, 1497341 - 1497283
Alignment:
| Q |
804 |
gatcaacttgccattggaaaagaaactggtcgcagactcggaatgggaaccaacatgta |
862 |
Q |
| |
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||||| |||||||||||||| ||||||||| | || || ||||||||||| |||||||| |
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|
| T |
1497341 |
gatcagcttgccattggaaaggaaactggtagaaggcttggaatgggaacaaacatgta |
1497283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 913 - 958
Target Start/End: Original strand, 50275956 - 50276001
Alignment:
| Q |
913 |
ttccaattgatgaacttattgagaaggctgatggatttgctggagt |
958 |
Q |
| |
|
||||| ||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
50275956 |
ttccagttgatgagttgattgagaaggctgatggatttgctggagt |
50276001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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