View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_low_10 (Length: 451)
Name: NF16720_low_10
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_low_10 |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 66486 - 66925
Alignment:
| Q |
1 |
catttatgaatgcatgttggcaatgtcaagcaattagagttcgaaaaatgctagctgaattattcttctaaaccttaaaaagccaagaaaagggtacata |
100 |
Q |
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| T |
66486 |
catttatgaatgcatgttggcaatgtcaagcaattagagttcgaaaaatgctagctgaattattcttctaaaccttaaaaagccaagaaaagggtacata |
66585 |
T |
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| Q |
101 |
aaaaagtcctcacttctgttgatgaatataaaattcaaaacagctctcactttaacacttgacattgacaacactgacgaatatgaagaaactttgaggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
66586 |
aaaaagtcctcacttctgttgatgaatataaaattcaaaacagctctcactttaacacttgacattgacaacactgacgaatatgaagaaactttgaggg |
66685 |
T |
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| Q |
201 |
aagagtgtgaatcggtggaaagttggcaagagaagagattgttagcgagatccagttttggataaatgcttccttgcaatatgaatatatataacttata |
300 |
Q |
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| T |
66686 |
aagagtgtgaatcggtggaaagttggcaagagaagagattgttagcgagatccagttttggataaatgcttccttgcaatatgaatatatataacttata |
66785 |
T |
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| Q |
301 |
caaaatacaacacagataacacaacaaattataaaatcgtatttaatgtgaattcttccgatgaagttatccccatgggatgtataggctgacatcacta |
400 |
Q |
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| T |
66786 |
caaaatacaacacagataacacaacaaattat-aaatcgtatttaatgtgaattcttccgatgaagttatccccatgggatgcataggctgacatcacta |
66884 |
T |
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| Q |
401 |
ctagttagaaatgcaaaca-gttaaattacaaaactttcat |
440 |
Q |
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| T |
66885 |
ctagttagaaatgcaaacaggttaaattacaaaactttcat |
66925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 72809 - 72843
Alignment:
| Q |
129 |
taaaattcaaaacagctctcactttaacacttgac |
163 |
Q |
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| T |
72809 |
taaaattcaaagcagctctcactttaacacttgac |
72843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 387
Target Start/End: Original strand, 21005466 - 21005545
Alignment:
| Q |
307 |
acaacacagataacacaacaaattataaaatcgtatttaatgtgaattcttccgatgaagttatccccatgggatgtatag |
387 |
Q |
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| T |
21005466 |
acaacacagataacacaacaaataataca-tcgtacttaacgtgaattctttcaatgaagttatccccatgcgttgtatag |
21005545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 32007139 - 32007208
Alignment:
| Q |
192 |
ctttgagggaagagtgtgaatcggtggaaagttggcaagagaagagattgttagcgagatccagttttgg |
261 |
Q |
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| T |
32007139 |
ctttgagagaagagtgtgaatcggtggaaagttcggaagagaagagatcgttggggagattcatttttgg |
32007208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20978207 - 20978248
Alignment:
| Q |
1 |
catttatgaatgcatgttggcaatgtcaagcaattagagttc |
42 |
Q |
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| T |
20978207 |
catttatgaatgcatgttgacaatgtcaagcgattagagttc |
20978248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 91
Target Start/End: Original strand, 31987159 - 31987190
Alignment:
| Q |
60 |
ttattcttctaaaccttaaaaagccaagaaaa |
91 |
Q |
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| T |
31987159 |
ttattcttctaaaccttaaaaagccaagaaaa |
31987190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 32002217 - 32002264
Alignment:
| Q |
192 |
ctttgagggaagagtgtgaatcggtggaaagttggcaagagaagagat |
239 |
Q |
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| T |
32002217 |
ctttgagagaagagtgtgactcggtggaaagtttggaagagaagagat |
32002264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 21005395 - 21005450
Alignment:
| Q |
247 |
gagatccagttttggataaatgcttccttgcaatatgaatatatataacttatacaaaat |
306 |
Q |
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| T |
21005395 |
gagatccatttttggataaatgcttcctttcaatacga----atataacttatacaaaat |
21005450 |
T |
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