View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_low_11 (Length: 425)
Name: NF16720_low_11
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 43 - 406
Target Start/End: Complemental strand, 37158045 - 37157682
Alignment:
| Q |
43 |
ctcatcaggttatggaaactgtgtctattcttcacctgggtatgtgtcatatcataacattactaatttgccaaaatagaaagaagcttacaaatatttt |
142 |
Q |
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| T |
37158045 |
ctcatcaggttatggaaactgtgtctattcttcacctgggtatgtgtcatatcataacattactaatttgccaaaatagaaagaagcttacaaatatttt |
37157946 |
T |
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| Q |
143 |
attttaccattgcattaatttaataataacagcaatttattgttttatgttacagctctgttggttcttctgctccaccttcattgggaaagcataacaa |
242 |
Q |
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| T |
37157945 |
attttaccattgcattaatttaataataacagcaatttattgttttatgttacagctctgttggttcttctgctccaccttcattgggaaagcataacaa |
37157846 |
T |
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| Q |
243 |
aagtttagtgtggtcgaagctcatttctctgctattgttttcatactattggatgtgacaaatactatgttatggtcggtggacaaaaggaaaaaggaat |
342 |
Q |
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| T |
37157845 |
aagtttagtgtggttgaagctcatttctctgctattgttttcatactattggatgtgacaaatactatgttatggtcggtggacaaaaggaaaaaggaat |
37157746 |
T |
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| Q |
343 |
tagaggaatgttagggagtgtagctttgttagcattttgtaatagtggtcatgttgattatgct |
406 |
Q |
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| T |
37157745 |
tagaggaatgttagggagtgtagctttgttagcattttgtaatagtggtcatgttgattatgct |
37157682 |
T |
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Back To:
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Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 124 - 312
Target Start/End: Complemental strand, 7828937 - 7828754
Alignment:
| Q |
124 |
agaagcttacaaatattttattttaccattgcattaatttaataataacagcaatttattgttttatgttacagctctgttggttcttctgctccacctt |
223 |
Q |
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| T |
7828937 |
agaagcttacaaatactttattttaccattaca-----ttaataattacagcaatttattgttttatgttacagctttgttggttgttctgctccacctt |
7828843 |
T |
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| Q |
224 |
cattgggaaagcataacaaaagtttagtgtggtcgaagctcatttctctgctattgttttcatactattggatgtgacaaatactatgt |
312 |
Q |
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|||||| |||| ||||||||||||||| ||||| ||| || | |||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
7828842 |
cattggaaaagaataacaaaagtttagcgtggttgaaacttacttctttgctattgttttcatactattggatgtgactaatactatgt |
7828754 |
T |
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