View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_low_12 (Length: 420)
Name: NF16720_low_12
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 53491630 - 53491223
Alignment:
| Q |
1 |
cttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
53491630 |
cttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccag |
53491531 |
T |
|
| Q |
101 |
tgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491530 |
tgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattcta |
53491431 |
T |
|
| Q |
201 |
gagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491430 |
gagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggt |
53491331 |
T |
|
| Q |
301 |
tatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaattttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491330 |
tatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaattttt |
53491231 |
T |
|
| Q |
401 |
cacaggtt |
408 |
Q |
| |
|
|||||||| |
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| T |
53491230 |
cacaggtt |
53491223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 5 - 408
Target Start/End: Complemental strand, 53499219 - 53498819
Alignment:
| Q |
5 |
tttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgcc |
104 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53499219 |
tttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgcc |
53499120 |
T |
|
| Q |
105 |
ttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagaga |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
53499119 |
ttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagca-aaaatacgtgctgagttagattctagaga |
53499021 |
T |
|
| Q |
205 |
taactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatc |
304 |
Q |
| |
|
|| || |||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||| |||||||| |||||| ||||||||| |
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| T |
53499020 |
tagctactctcctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatc |
53498921 |
T |
|
| Q |
305 |
tatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcaca |
404 |
Q |
| |
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||||||||| |||||||||||||||||||| || |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
53498920 |
tatgttgtcctgttgttgctcttatattct--cacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcaca |
53498823 |
T |
|
| Q |
405 |
ggtt |
408 |
Q |
| |
|
|||| |
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|
| T |
53498822 |
ggtt |
53498819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 7 - 353
Target Start/End: Complemental strand, 16070303 - 16069958
Alignment:
| Q |
7 |
taacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgcctt |
106 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatgacaagggattggtgctaccgcctaaagtagcatcaactcaagtcattgtgattccagtgcctt |
16070204 |
T |
|
| Q |
107 |
acaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagata |
206 |
Q |
| |
|
||||| | |||||| | |||||||| ||||| ||||||||||| | ||||| |||||| |||||| ||||||| ||||| ||||||||||||||||||| |
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|
| T |
16070203 |
acaaaaacgttgattgtgaaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagata |
16070105 |
T |
|
| Q |
207 |
actgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatcta |
306 |
Q |
| |
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||| ||||| |||||| ||||||||||| |||||| |||||||||||||| ||| | |||||||||||| ||||| ||||| ||||||||||||||| | |
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| T |
16070104 |
actattctcttgaaagaaagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaa |
16070005 |
T |
|
| Q |
307 |
tgttgtcttgttgttgctcttatattcttacatatgtcattttgctt |
353 |
Q |
| |
|
|||||| | || |||| ||| ||||||| ||||||||||| ||||| |
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|
| T |
16070004 |
tgttgttatattattgcacttgtattctttcatatgtcattatgctt |
16069958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
229 |
ttctgattgggaattgaaaggtgtccctctaaggattga |
267 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||| |
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| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 45355142 - 45355440
Alignment:
| Q |
1 |
cttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccag |
100 |
Q |
| |
|
|||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| | |
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| T |
45355142 |
ctttttcaacagattggggtgatggtgatggttcatggtgatgacaagggattggtgctgccacctaaagtagcatcagttcaagtcattgtgattcctg |
45355241 |
T |
|
| Q |
101 |
tgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattcta |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||| | |||| ||||||||||||||||||| ||||| | ||| |||||||||| |||| | | |
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|
| T |
45355242 |
tgccttacaaagatgctgatactcaaggaatctttgatgcctgtaccgcaactgtgaatatgttgttggaagc-aggaattcgtgctgagtcagatgcca |
45355340 |
T |
|
| Q |
201 |
gagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggt |
300 |
Q |
| |
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|||| |||| |||||||| | |||| |||||| | |||||| |||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||| |
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| T |
45355341 |
gagacaactattctcctggatggaaatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggt |
45355440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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