View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_low_16 (Length: 353)
Name: NF16720_low_16
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 41 - 346
Target Start/End: Complemental strand, 40119494 - 40119187
Alignment:
| Q |
41 |
ataataatataatgcctccaaatttgtcttctgtgaaacgttcactcacagcatttaatgtcatgatactgaagggtacgagtctagactctagatgaag |
140 |
Q |
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| T |
40119494 |
ataataatataatgcctccaaatttgtctttggtgaaacgttcactcacagcatttaatgtcatgatattgaagggtacgagtctagactctagatgaag |
40119395 |
T |
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| Q |
141 |
attcaaattcaagatgagttgagtgataagtgaatgagagattattggaatttggagcacttgataatagcagcctctgtcccataccacgtg------- |
233 |
Q |
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| T |
40119394 |
attcaaattcaagatgagttgagtgataagtgaatgagagattat-------tggagcacttgataatagcagcctctgtcccataccacgtgtattttt |
40119302 |
T |
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| Q |
234 |
-tatctgtcttattacgaggtaatgagtatgagtgagtgtattgactaataatggc-aagcaacgggaacagaccggaaatggtccccctcgcccaccat |
331 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40119301 |
ttatctgtcttattacgagggaatgagtatgagtgagtgtattgactaataatggcaaagcaacgggaacagaccggaaatggtccccctcgcccaccat |
40119202 |
T |
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| Q |
332 |
atttgccttcctatg |
346 |
Q |
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||||||||||||||| |
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| T |
40119201 |
atttgccttcctatg |
40119187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 40123423 - 40123392
Alignment:
| Q |
192 |
ttggagcacttgataatagcagcctctgtccc |
223 |
Q |
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| T |
40123423 |
ttggagcacttgataatagcagcctctgtccc |
40123392 |
T |
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