View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_low_17 (Length: 338)
Name: NF16720_low_17
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 42453022 - 42453266
Alignment:
| Q |
15 |
ataggagagtggagggtcgatgcttttggatcgaagagaaaaacaatgtaatttattgatttcaagtgcaaccatgcgaatatttgaaacagatatctaa |
114 |
Q |
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| T |
42453022 |
ataggagagtggagggtcgatgcttttggatcgaagagaaaaacaatgtaatttattgatttcaagtgcagccatgcgaatatttgaaacagatatctaa |
42453121 |
T |
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| Q |
115 |
ttgataataaaattaaaatgaccaaagaattggaatgctatatgaaggatttttcaacaagaacagcacttttttatacgacatgggaatgagagacaaa |
214 |
Q |
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| T |
42453122 |
ttgataataaaattaaaatgaccaaagaattggaatgctatatgaaggatttttaaacaagaacagcacttttttatacgacatgggaatgagagacaaa |
42453221 |
T |
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| Q |
215 |
gacagcgataacctaaggtgaattgatgattaattgagaccatta |
259 |
Q |
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| T |
42453222 |
aacagcgataacctaaggtgaattgatgattaattgagaccatta |
42453266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 261 - 338
Target Start/End: Original strand, 42453409 - 42453486
Alignment:
| Q |
261 |
ttgtcgtaccaacaacaatgtctcaatcttcttacataaccgagatttaagtgctccaacatcaattgcaataaaaaa |
338 |
Q |
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| T |
42453409 |
ttgtcgtaccaacaacaatgtctcaatcttctcacataaccgagatttaagtgctccaatatcaattgcagtaaaaaa |
42453486 |
T |
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