View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_low_22 (Length: 281)
Name: NF16720_low_22
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 44791682 - 44791944
Alignment:
| Q |
1 |
taggtaatcaatcaagtccctctaatgagaaaaatgatgaacttgagtcggttgacaataatattggtaatcttcgagagaacaccaccttacacgtctt |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44791682 |
taggtaatcaatcaagtccctctggtgagaaaaatgatgaacttgagtcggttgacaataatattggtaatcttcaagagaacaccaccttacacgtctt |
44791781 |
T |
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| Q |
101 |
tgtcactaaaaaatcccttagaattaattaggagtttccaaaatcatttaaaaatgaaggttttcaaggnnnnnnnttgagaggaggaccaaagaagcac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44791782 |
tgtcactaaaaaatcccttagaattaattaggagtttccaaaatcatttaaaaatgaaggttttcaaggaaaaaaattgagaggaggaccaaagaagcac |
44791881 |
T |
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| Q |
201 |
aagcatgaagataagtacatgtaaaatgaaaaggcgagaaattcattggtgtatgcataaaat |
263 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44791882 |
aagcatgaagataagtacgtgtaaaatgaaaaagcgagaaattcattggtgtatgcataaaat |
44791944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 35165928 - 35165673
Alignment:
| Q |
1 |
taggtaatcaatcaagtccctctaatgagaaaaatgatgaacttgagtcggttgacaataatattggtaatcttcgagagaacaccaccttacacgtctt |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35165928 |
taggtaatcaatcaagtccctctagtgagaaaaatgatgaacttgagtcggttgacaataatattggtaatcttcaagagaacaccaccttacacgtctc |
35165829 |
T |
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| Q |
101 |
tgtcactaaaaaatcccttagaattaattaggagtttccaaaatcatttaaaaatgaaggttttcaaggnnnnnnnttgagaggaggaccaaagaagcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
35165828 |
tgtcactaaaaaatcccttagaattaattaggagtttccaaaatcatttaaaaatgaa-------aaggaaaaaaattgagaggaggaccaaagaagcac |
35165736 |
T |
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| Q |
201 |
aagcatgaagataagtacatgtaaaatgaaaaggcgagaaattcattggtgtatgcataaaat |
263 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35165735 |
aagcatgaagataagtacatgtaaaatgaaaaagcgagaaattcattggtgtatgcataaaat |
35165673 |
T |
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