View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_low_23 (Length: 269)
Name: NF16720_low_23
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_low_23 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 66240 - 66490
Alignment:
| Q |
19 |
acacaaacatcgaacatgagtagaaatgttaacactggtagtaatttaatcagaatgaattaattgatgggaatcatcttctagataatttgtttgaaaa |
118 |
Q |
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| T |
66240 |
acacaaacatcgaacatgagtagatatgttgacaccggtagtaatttaatcagaatgaattaattgatgggaatcatcttctagataatttgtttgaaaa |
66339 |
T |
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| Q |
119 |
agttccatgatcatatccatcagggtcatctgcgagacacgcttatcggtacactatttgctctttaatttatcaagtttaggaataataaatgcatttc |
218 |
Q |
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| T |
66340 |
agttctatgatcatatccatcacggtcatctgcgagacacgcttatcggtacactatttgctctttaatttatcaagtttaggaataataaatgcatttc |
66439 |
T |
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| Q |
219 |
ttctgtacacaacaacactgccatagccattctccataccatatatcattt |
269 |
Q |
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| T |
66440 |
ttctgtacacaacaacactgccatagccattctccataccatatatcattt |
66490 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 20978065 - 20978126
Alignment:
| Q |
39 |
tagaaatgttaacactggtagtaatttaatcagaatgaattaattgatgggaatcatcttct |
100 |
Q |
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| T |
20978065 |
tagatatgttgacaccggtagaaatttaatcaaaatgaattaattgaagggactcatcttct |
20978126 |
T |
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