View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_low_26 (Length: 241)
Name: NF16720_low_26
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_low_26 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 31109980 - 31110222
Alignment:
| Q |
1 |
tatctatatctatatgtattgcaaattacaactctcaggttatataaacttatacttgcagacatgctaggagatgaaatca--acataatagttacaaa |
98 |
Q |
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| T |
31109980 |
tatctatatctatatgtattgcaaattacaactctcaggttatataaacttatacttgcagacatgctaggagatgaaatttgcacataacagttacaaa |
31110079 |
T |
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| Q |
99 |
atggaaaaatcaacatatcagcatggtacttaacaagcgtaaactcaacatatttgaatgagtctacagttgttaattgtctacttcctttaatattcac |
198 |
Q |
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| T |
31110080 |
atggaaaaatcaacatatcagcatggtacttaacaagcgtaaactcaacatatttgaatgagtctatagttgttaattgtctacttcctttaatattcac |
31110179 |
T |
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| Q |
199 |
ttcatgcttcatacatacatcaatctagtacatatatagcatc |
241 |
Q |
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| T |
31110180 |
ttcatgcctcatacatacatcaatctagtacatatatagcatc |
31110222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 31080261 - 31080359
Alignment:
| Q |
87 |
aatagttacaaaatgga---aaaatcaacatatcagcatggtac--ttaacaagcgtaaactcaacatatttgaatgagtctacagttgttaattgtct |
180 |
Q |
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| T |
31080261 |
aatagttacaaaatggataaaaaatcaacatatcatcatggtacaattaacaagcgtagactcaacatatttgaatgagtctatagttgttaattgtct |
31080359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 31080163 - 31080234
Alignment:
| Q |
9 |
tctatatgtattgcaaattacaactctcaggttatataaacttatacttgcagacatgctaggagatgaaat |
80 |
Q |
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| T |
31080163 |
tctatatgtattgcaaattacaattctcaggttgtataaacttgtgcttgcagacattctaggagatgaaat |
31080234 |
T |
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