View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16720_low_28 (Length: 238)

Name: NF16720_low_28
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16720_low_28
NF16720_low_28
[»] chr7 (3 HSPs)
chr7 (1-230)||(27597776-27598005)
chr7 (28-231)||(21416278-21416479)
chr7 (78-178)||(23568901-23569000)
[»] chr3 (7 HSPs)
chr3 (99-229)||(16143327-16143457)
chr3 (98-229)||(40195959-40196090)
chr3 (144-230)||(54017686-54017773)
chr3 (149-230)||(32200978-32201059)
chr3 (136-231)||(43978712-43978807)
chr3 (149-191)||(16869691-16869733)
chr3 (165-213)||(32201278-32201326)
[»] chr4 (5 HSPs)
chr4 (44-224)||(11197062-11197240)
chr4 (102-231)||(34946248-34946375)
chr4 (68-230)||(10396281-10396436)
chr4 (91-229)||(12717968-12718104)
chr4 (152-231)||(2917277-2917356)
[»] chr6 (2 HSPs)
chr6 (28-232)||(11637857-11638061)
chr6 (77-231)||(7301437-7301590)
[»] chr1 (3 HSPs)
chr1 (28-230)||(31973473-31973674)
chr1 (98-224)||(34665953-34666078)
chr1 (144-210)||(47159140-47159206)
[»] chr5 (6 HSPs)
chr5 (28-224)||(13112812-13113006)
chr5 (24-224)||(13112354-13112551)
chr5 (46-224)||(13042834-13043010)
chr5 (24-85)||(13042360-13042421)
chr5 (24-231)||(36389131-36389332)
chr5 (144-231)||(41341389-41341477)
[»] chr2 (2 HSPs)
chr2 (68-224)||(28226517-28226669)
chr2 (42-224)||(35414288-35414466)
[»] chr8 (3 HSPs)
chr8 (68-173)||(3671046-3671149)
chr8 (129-231)||(5981579-5981680)
chr8 (117-205)||(2954388-2954474)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 27597776 - 27598005
Alignment:
Q  1 tcgttgtcttaaggttttgagaggtgatgtctctctcattgtgggtcctagatatttaacccatcgtcgctccaagcgctccccatacttcccaattaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |||    
T  27597776 tcgttgtcttaaggttttgagaggtgatgtctctctcattgtgggtcctagatatttaacccattgtcgctccaagcgctccccagactccccaataaac 27597875  T
Q  101 tggtatcaaagcctgattaggcttgctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagat 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27597876 tggtatcagagcctgattaggcttgctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgtgggtgagtcacacttgaaggagagat 27597975  T
Q  201 cgttggaaatcaaatgtgagtgatgatgtc 230  Q
    ||||||||||||| |||||||||| |||||    
T  27597976 cgttggaaatcaagtgtgagtgataatgtc 27598005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 21416479 - 21416278
Alignment:
Q  28 tgtctctctcattgtgggtcctagatatttaacccatcgtcgctccaagcgctccccatacttcccaattaactggtatcaaagcctgattaggcttgct 127  Q
    |||||||||| | | ||||||||||| || ||||||| ||||||||||||||| |||| ||| |||||  || |||||||| |||||  |||||||||||    
T  21416479 tgtctctctcttagcgggtcctagatgttcaacccattgtcgctccaagcgcttcccagactccccaacaaattggtatcagagcctagttaggcttgct 21416380  T
Q  128 gggggagtgggagcgggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgttggaaatcaaatgtgagtgatgat 227  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||| | || || ||  || | |||||| |||||||||| ||    
T  21416379 gggggagtgggagc--gggatcctagtgtggatcatcctagtgatgtgggtgagtcacacttcagggggaaatttttaggaatcaagtgtgagtgattat 21416282  T
Q  228 gtcc 231  Q
    ||||    
T  21416281 gtcc 21416278  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 23569000 - 23568901
Alignment:
Q  78 gctccccatacttcccaattaactggtatcaaagcctgattaggctt-gctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgcgg 176  Q
    |||||||| ||| |||||  ||||||||||| |||||| |||||||| ||||||||||||||||| ||  | ||||||||||||||||||||||||| ||    
T  23569000 gctccccagactccccaacaaactggtatcatagcctggttaggctttgctgggggagtgggagcagg--atcctagtgtggatcatcctagtgatgtgg 23568903  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 99 - 229
Target Start/End: Original strand, 16143327 - 16143457
Alignment:
Q  99 actggtatcaaagcctgattaggcttgctgg--gggagtgggagcgggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggag 196  Q
    |||||||||| |||||| |||||||||||||  |||||||||||||||  |  |||||||||||||||||||||||| ||||||||||||||||| || |    
T  16143327 actggtatcagagcctggttaggcttgctggacgggagtgggagcggg--attctagtgtggatcatcctagtgatgtgggtgagtcacacttgaggggg 16143424  T
Q  197 agatcgttggaaatcaaatgtgagtgatgatgt 229  Q
    |||| |||||||||||| |||||||||| ||||    
T  16143425 agattgttggaaatcaagtgtgagtgataatgt 16143457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 40196090 - 40195959
Alignment:
Q  98 aactggtatcaaagc-ctgattaggcttgctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggag 196  Q
    ||||||||||| ||| ||| ||||||||| ||||| || |||||||||  | ||||||||||||||  ||||||||| |||||| |||||||||| || |    
T  40196090 aactggtatcagagctctggttaggcttggtggggtagcgggagcggg--atcctagtgtggatcaggctagtgatgtgggtgactcacacttgaggggg 40195993  T
Q  197 agatcgtt-ggaaatcaaatgtgagtgatgatgt 229  Q
    |||| ||| ||||||||| |||||||||| ||||    
T  40195992 agattgttgggaaatcaagtgtgagtgattatgt 40195959  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 54017773 - 54017686
Alignment:
Q  144 gggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgtt-ggaaatcaaatgtgagtgatgatgtc 230  Q
    |||||||||||||||||||  ||||||||| |||||| |||||||||| || ||||| ||| || |||||| |||||||||| |||||    
T  54017773 gggaccctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagattgttgggtaatcaagtgtgagtgattatgtc 54017686  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 32200978 - 32201059
Alignment:
Q  149 cctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgttggaaatcaaatgtgagtgatgatgtc 230  Q
    |||| ||| |||||| ||||||||| ||||||||||| ||| | || ||||| ||||| ||||||||||||||||| |||||    
T  32200978 cctaatgtagatcatgctagtgatgtgggtgagtcacgcttaagggggagattgttgggaatcaaatgtgagtgattatgtc 32201059  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 43978807 - 43978712
Alignment:
Q  136 gggagcgggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgttgg-aaatcaaatgtgagtgatgatgtcc 231  Q
    |||||||||  | ||||||||||||||  |||||||||  ||||| |||||||||| || ||||| ||||| ||||||| |||||||||| ||||||    
T  43978807 gggagcgggatatcctagtgtggatcaaactagtgatg-tggtgattcacacttgagggggagattgttggaaaatcaagtgtgagtgattatgtcc 43978712  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 16869733 - 16869691
Alignment:
Q  149 cctagtgtggatcatcctagtgatgcgggtgagtcacacttga 191  Q
    ||||||||||||||| ||||||||| |||||| ||||||||||    
T  16869733 cctagtgtggatcatgctagtgatgtgggtgattcacacttga 16869691  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 32201278 - 32201326
Alignment:
Q  165 ctagtgatgcgggtgagtcacacttgaaggagagatcgttggaaatcaa 213  Q
    ||||||||| ||||||||||||||||| || ||||| ||| ||||||||    
T  32201278 ctagtgatgtgggtgagtcacacttgagggggagattgttagaaatcaa 32201326  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 224
Target Start/End: Original strand, 11197062 - 11197240
Alignment:
Q  44 ggtcctagatatttaacccatcgtcgctccaagcgctccccatacttcccaattaactggtatcaaagcctgattaggcttgctgggggagtgggagcgg 143  Q
    |||||||| | |||| ||||| | |||||||| ||||||||| ||| || ||  ||||||||||| |||||  |||||||||||||||||||||||||      
T  11197062 ggtcctaggtgtttagcccattgccgctccaaacgctccccagactcccaaacaaactggtatcagagcctagttaggcttgctgggggagtgggagc-- 11197159  T
Q  144 gggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgttggaaatcaaatgtgagtgat 224  Q
    |||| ||| ||||||||||||||||||||| |||||||| ||||||||  | ||||| |||  ||| ||| ||||||||||    
T  11197160 gggatcctggtgtggatcatcctagtgatgtgggtgagtaacacttgattgggagattgttaaaaaccaagtgtgagtgat 11197240  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 34946375 - 34946248
Alignment:
Q  102 ggtatcaaagcctgattaggcttgctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatc 201  Q
    ||||||| |||||| ||||| |||||||||||||||||  |||  | | |||| |||||||||||||||||| |||||||||||||||||  | |||||     
T  34946375 ggtatcagagcctggttaggtttgctgggggagtgggactggg--atcatagtttggatcatcctagtgatgtgggtgagtcacacttgagagggagatt 34946278  T
Q  202 gttggaaatcaaatgtgagtgatgatgtcc 231  Q
    |||||||||||| |||||||||| ||||||    
T  34946277 gttggaaatcaagtgtgagtgataatgtcc 34946248  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 230
Target Start/End: Original strand, 10396281 - 10396436
Alignment:
Q  68 cgctccaagcgctccccatact-tcccaattaactggtatcaaagcctgattaggcttgctgggggagtgggagcgggggaccctagtgtggatcatcct 166  Q
    |||||| ||||||||||||||| ||||||  |||||| || | |||||  |||||||| |||||||||||||| |        |||||||||||||||||    
T  10396281 cgctcccagcgctccccatactctcccaacaaactggcattagagcctagttaggctttctgggggagtgggatc--------ctagtgtggatcatcct 10396372  T
Q  167 agtgatgcgggtgagtcacacttgaaggagagatcgttggaaatcaaatgtgagtgatgatgtc 230  Q
    ||||||| ||| |||||| |||||| || ||||| |||||||||||| |||||||||| |||||    
T  10396373 agtgatgtgggcgagtcatacttgagggggagattgttggaaatcaagtgtgagtgattatgtc 10396436  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 91 - 229
Target Start/End: Complemental strand, 12718104 - 12717968
Alignment:
Q  91 cccaattaactggtatcaaagcctgattaggcttgctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttg 190  Q
    |||||| || |||||| | |||||  ||||||||||||||||||||||||| ||  | |||||| |||||||||||||||||| |||| |||||||||||    
T  12718104 cccaataaattggtattagagcctagttaggcttgctgggggagtgggagcagg--atcctagtatggatcatcctagtgatgtgggttagtcacacttg 12718007  T
Q  191 aaggagagatcgttggaaatcaaatgtgagtgatgatgt 229  Q
    | |  || || ||| |||||||| |||||| ||| ||||    
T  12718006 aggaggaaattgttagaaatcaagtgtgagagataatgt 12717968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 2917356 - 2917277
Alignment:
Q  152 agtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgttggaaatcaaatgtgagtgatgatgtcc 231  Q
    ||||||||| | |||||||||| ||||||||||||||||| ||  |||| ||||||||||||  ||||||||| ||||||    
T  2917356 agtgtggattagcctagtgatgtgggtgagtcacacttgaggggaagattgttggaaatcaatcgtgagtgataatgtcc 2917277  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 232
Target Start/End: Complemental strand, 11638061 - 11637857
Alignment:
Q  28 tgtctctctcattgtgggtcctagatatttaacccatcgtcgctcc-aagcgctccccatacttcccaattaactggtatcaaagcctgattaggcttgc 126  Q
    |||||||||| ||| ||||||||||  ||||||||||   |||||| |||||||||| | ||| |||||  ||| ||||||| ||||||||||||||||     
T  11638061 tgtctctctctttgcgggtcctagacgtttaacccattaccgctcccaagcgctcccaagactccccaagaaacaggtatcagagcctgattaggcttgt 11637962  T
Q  127 tgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgttggaaatcaaatgtgagtgatga 226  Q
    |||||| | | ||| | |||| |||  |||||||||| ||||| ||| || |||||||||||||| ||  |||| |||| ||||||| |||||||||| |    
T  11637961 tggggg-gagtgagagtgggatccttatgtggatcattctagtcatgtggttgagtcacacttgaggggaagattgttgaaaatcaagtgtgagtgataa 11637863  T
Q  227 tgtcca 232  Q
    ||||||    
T  11637862 tgtcca 11637857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 7301590 - 7301437
Alignment:
Q  77 cgctccccatacttcccaattaactggtatcaaagcc-tgattaggcttgctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgcg 175  Q
    ||||||||| ||| |||||  |||| |||||| |||| || ||||||| | ||||||||||||||||||  | |||| |||||||||  ||||||||| |    
T  7301590 cgctccccaaactccccaacaaactagtatcagagccatggttaggctcgatgggggagtgggagcggg--atcctaatgtggatcaggctagtgatgtg 7301493  T
Q  176 ggtgagtcacacttgaaggagagatcgttggaaatcaaatgtgagtgatgatgtcc 231  Q
    ||||||||||| |||| |  || || |||| |||| || |||||||||| ||||||    
T  7301492 ggtgagtcacagttgaggaggatattgttgaaaattaagtgtgagtgattatgtcc 7301437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 230
Target Start/End: Complemental strand, 31973674 - 31973473
Alignment:
Q  28 tgtctctctcattgtgggtcctagatatttaacccatcgtcgctccaagcgctccccatacttcccaattaactggtatcaaagcct-gattaggcttgc 126  Q
    |||||||||| | | |||||||||| ||||| || || |||| ||| | | ||| ||| | | |||||  || |||||||||||||| | ||||||| |     
T  31973674 tgtctctctcttagcgggtcctagacatttagcctattgtcgttcccaacactcaccaaaatccccaacaaattggtatcaaagccttggttaggctcga 31973575  T
Q  127 tgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgttggaaatcaaatgtgagtgatga 226  Q
    ||| ||||||||||||||  | ||||||||||||||  ||||||||| | ||||||||||||||| || ||||| |||||||||||| |||||||||| |    
T  31973574 tggaggagtgggagcggg--atcctagtgtggatcagactagtgatgtgagtgagtcacacttgagggggagattgttggaaatcaagtgtgagtgatta 31973477  T
Q  227 tgtc 230  Q
    ||||    
T  31973476 tgtc 31973473  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 34666078 - 34665953
Alignment:
Q  98 aactggtatcaaag-cctgattaggcttgctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggag 196  Q
    ||||||||||| || |||| ||||||| |||||||  |||||||||||  | ||||||||||||||  ||||||||| | || | |||||||||| ||||    
T  34666078 aactggtatcagagtcctggttaggctcgctggggtggtgggagcggg--atcctagtgtggatcacactagtgatgtgagtaaatcacacttgagggag 34665981  T
Q  197 agatcgttggaaatcaaatgtgagtgat 224  Q
    |||| |||||||||||  ||||||||||    
T  34665980 agattgttggaaatcatgtgtgagtgat 34665953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 47159206 - 47159140
Alignment:
Q  144 gggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgttggaaat 210  Q
    |||| ||||||||||||||||||||||||| || |||||||||||| || |  |||| |||||||||    
T  47159206 gggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattgttggaaat 47159140  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 13112812 - 13113006
Alignment:
Q  28 tgtctctctcattgtgggtcctagatatttaacccatcgtcgctccaagcgctccccatacttccc-aattaactggtatcaaagcctgattaggcttgc 126  Q
    |||||||||| | | |||||||||| ||||| ||||| |||||| | ||||||||||| ||| ||| ||  ||||||||||| |||||  ||||||||||    
T  13112812 tgtctctctcttagcgggtcctagacatttagcccattgtcgcttccagcgctccccagactcccccaacaaactggtatcagagccttcttaggcttgc 13112911  T
Q  127 tgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgttggaaatcaaatgtgagtgat 224  Q
    ||||| |||| |||||||  | || ||| |||||| || |||||||  | ||||||||||||||| || ||||| ||||||||||||  |||||||||    
T  13112912 tggggaagtgagagcggg--atcccagt-tggatcttcttagtgatatgagtgagtcacacttgagggggagattgttggaaatcaagagtgagtgat 13113006  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 13112354 - 13112551
Alignment:
Q  24 gtgatgtctctctcattgtgggtcctagatatttaacccatcgtcgctccaagcgctccccatacttcccaattaactggtatcaaagcctgattaggct 123  Q
    |||||||||||||| | | ||||||||||  |||||||||| ||||||||||||||||||||  || |||||  ||||| |||   || ||| |||||||    
T  13112354 gtgatgtctctctcttagcgggtcctagacgtttaacccattgtcgctccaagcgctccccaacctccccaacaaactgatatttgagtctggttaggct 13112453  T
Q  124 tgctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgttggaaatcaaatgtgagtga 223  Q
    || |||||||||||||  | || | | || |||||  | ||||||||||| || ||||||||||||| ||  | | | |||||||||||| |||||||||    
T  13112454 tgttgggggagtggga--gtggaatcatattgtgggccttcctagtgatgtggatgagtcacacttg-agagggggttgttggaaatcaagtgtgagtga 13112550  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 13042834 - 13043010
Alignment:
Q  46 tcctagatatttaacccatcgtcgctccaagcgctccccatacttccc-aattaactggtatcaaagcctgattaggcttgctgggggagtgggagcggg 144  Q
    ||||||| ||||| ||||| |||||| | | ||||||||| ||| ||| ||  ||||||||||| |||||  ||||||||||||||| |||| | |||||    
T  13042834 tcctagacatttagcccattgtcgcttccaacgctccccagactcccccaacaaactggtatcagagccttcttaggcttgctggggaagtgagtgcggg 13042933  T
Q  145 ggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgttggaaatcaaatgtgagtgat 224  Q
      | || ||| |||||| || |||||||  | ||||||||||||||| || ||||| ||||||||||||  |||||||||    
T  13042934 --atcccagt-tggatcttcttagtgatatgagtgagtcacacttgagggggagattgttggaaatcaagagtgagtgat 13043010  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 13042360 - 13042421
Alignment:
Q  24 gtgatgtctctctcattgtgggtcctagatatttaacccatcgtcgctccaagcgctcccca 85  Q
    |||||||||||||| | | ||||||||||  |||||||||| ||||||||||||||||||||    
T  13042360 gtgatgtctctctcttagcgggtcctagacgtttaacccattgtcgctccaagcgctcccca 13042421  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 231
Target Start/End: Complemental strand, 36389332 - 36389131
Alignment:
Q  24 gtgatgtctctctcattgtgggtcctagatatttaacccatcgtcgctccaagcgctccccatacttcccaattaactggtatcaaagcctgattaggct 123  Q
    |||||||||||||  | ||||||||| ||  ||||||| || | ||||||||||||||  ||  || | |||  ||||||||||| | | | ||||||||    
T  36389332 gtgatgtctctcttttagtgggtcctggacgtttaacc-attgccgctccaagcgctcttcagtctcctcaacaaactggtatcagaacataattaggct 36389234  T
Q  124 tgctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgttggaaatcaaatgtgagtga 223  Q
    ||||||||||||||||||  || | |||||| |||||| ||||||||||| ||  |||||| |||||| || ||| | ||||| |||||| || ||||||    
T  36389233 tgctgggggagtgggagc--ggaatcctagt-tggatcgtcctagtgatgtgg--gagtcaaacttgagggggagtttgttgggaatcaagtgcgagtga 36389139  T
Q  224 tgatgtcc 231  Q
    | ||||||    
T  36389138 taatgtcc 36389131  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 41341389 - 41341477
Alignment:
Q  144 gggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgtt-ggaaatcaaatgtgagtgatgatgtcc 231  Q
    |||| ||||||||||||||  ||||||||| |||||| |||||||||| || |||||  || || |||||| |||||||||| ||||||    
T  41341389 gggatcctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagattattgggtaatcaagtgtgagtgattatgtcc 41341477  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 68 - 224
Target Start/End: Original strand, 28226517 - 28226669
Alignment:
Q  68 cgctccaagcgctccccatacttcccaattaactggtatcaaagcctgattaggcttgctgggggagtgggagcgggggaccctagtgtggatcatccta 167  Q
    |||| ||||||||||||| ||| |||||  ||||||||||| |||||  |||| ||||||||| ||||||||||  |||| |||||| || |||| ||||    
T  28226517 cgcttcaagcgctccccaaactccccaacaaactggtatcagagcctagttagacttgctgggagagtgggagc--gggatcctagt-tgaatcaaccta 28226613  T
Q  168 gtgatgcgggtgagtcacacttgaaggagagatcgttggaaatcaaatgtgagtgat 224  Q
    ||||||  |||||||||| ||||| || ||||| |||||||||||| ||||| ||||    
T  28226614 gtgatg-aggtgagtcacgcttgagggggagattgttggaaatcaagtgtgactgat 28226669  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 224
Target Start/End: Complemental strand, 35414466 - 35414288
Alignment:
Q  42 tgggtcctagatatttaacccatcgtcgctccaagcgctccccatacttcccaattaactggtatcaaagcctgattaggcttgctgggggagtgggagc 141  Q
    ||||||||||| ||||| | ||| |  ||| |||||| |||||| ||| |||||| |  |||||||| || ||  |||||||||||  ||||||| || |    
T  35414466 tgggtcctagacatttagctcattgctgcttcaagcgttccccagactccccaataatttggtatcagagtcttgttaggcttgctaagggagtgtgaac 35414367  T
Q  142 gggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgttggaaatcaaatgtgagtgat 224  Q
    |||  | ||||||||||| | || ||||| |  || |||||||||||| |  |||| || |||||||||||||||||| ||||    
T  35414366 ggg--atcctagtgtggaccgtcttagtggtttggatgagtcacacttca--gagaaattgttggaaatcaaatgtgaatgat 35414288  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 3671149 - 3671046
Alignment:
Q  68 cgctccaagcgctccccatacttcccaattaactggtatcaaagcctgattaggcttgctgggggagtgggagcgggggaccctagtgtggatcatccta 167  Q
    ||||||| ||| |||||| ||| |||||  || |||||||| || |||  ||||||||||||||||||||||||  |||| ||||||||||||| |||||    
T  3671149 cgctccaggcgttccccagactccccaacaaattggtatcagagtctggctaggcttgctgggggagtgggagc--gggatcctagtgtggatcgtccta 3671052  T
Q  168 gtgatg 173  Q
    ||||||    
T  3671051 gtgatg 3671046  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 231
Target Start/End: Complemental strand, 5981680 - 5981579
Alignment:
Q  129 ggggagtgggagcgggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcg-ttggaaatcaaatgtgagtgatgat 227  Q
    ||||||||||||||||  | ||||||||||||||  ||||||||| |||||| |||| ||||| || ||||| | ||||||||||| |||||||||| ||    
T  5981680 ggggagtgggagcggg--atcctagtgtggatcaggctagtgatgtgggtgactcacgcttgagggggagattgtttggaaatcaagtgtgagtgattat 5981583  T
Q  228 gtcc 231  Q
    ||||    
T  5981582 gtcc 5981579  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 2954474 - 2954388
Alignment:
Q  117 ttaggcttgctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgcgggtgagtcacacttgaaggagagatcgttg 205  Q
    ||||||| | |||||||||||||||  |  | ||||||||||||||  ||||||||| |||||| |||||||||| || ||||| ||||    
T  2954474 ttaggctcggtgggggagtgggagcaag--atcctagtgtggatcaagctagtgatgtgggtgactcacacttgagggggagattgttg 2954388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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