View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16720_low_3 (Length: 571)

Name: NF16720_low_3
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16720_low_3
NF16720_low_3
[»] chr4 (4 HSPs)
chr4 (7-555)||(7969903-7970455)
chr4 (518-554)||(37042701-37042737)
chr4 (518-546)||(44719398-44719426)
chr4 (519-555)||(48174131-48174167)
[»] chr7 (1 HSPs)
chr7 (490-555)||(21078125-21078190)
[»] chr6 (1 HSPs)
chr6 (518-555)||(32945456-32945493)
[»] chr5 (4 HSPs)
chr5 (511-555)||(38657051-38657095)
chr5 (490-553)||(29922494-29922557)
chr5 (515-555)||(683735-683775)
chr5 (515-555)||(41894281-41894321)
[»] chr1 (4 HSPs)
chr1 (518-555)||(14225873-14225910)
chr1 (518-555)||(38869090-38869127)
chr1 (515-555)||(30396763-30396803)
chr1 (515-555)||(50257778-50257818)
[»] chr8 (1 HSPs)
chr8 (515-543)||(33118206-33118234)
[»] chr3 (1 HSPs)
chr3 (523-555)||(55244486-55244518)
[»] chr2 (2 HSPs)
chr2 (515-555)||(6219173-6219213)
chr2 (519-555)||(37470171-37470207)


Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 7 - 555
Target Start/End: Original strand, 7969903 - 7970455
Alignment:
Q  7 ctgaaatgaaaaacagaaattgtagataattcatatagtttcagaaaactaaggctaaaatccactgaagaaaaagaaggaaactttaccaaggaggagc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7969903 ctgaaatgaaaaacagaaattgtagataattcatatagtttcagaaaactaaggctaaaatccgctgaagaaaaagaaggaaactttaccaaggaggagc 7970002  T
Q  107 ataatgggtgagatcattgacattctcggaggttgatacacaattcttagttgctggacacagagccaatgctgatgagtttttctgaactccaagatat 206  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7970003 ataatgggtgagatcattgacattctcagaggttgatacacaattcttagttgctggacacagagccaatgctgatgagtttttctgaactccaagatat 7970102  T
Q  207 tcaggcttcttcccactgtatcgaaacacatagcaaaacaacttaattaagcccttataaattataataaccatag--tatgacataaaatctgttacca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||  ||| ||||||||||||||||||    
T  7970103 tcaggcttcttcccactgtatcgaaacacatagcaaaacaacttaattaagccc-------ttataataaccatagtatatcacataaaatctgttacca 7970195  T
Q  305 taattcaacaaggaataaagtaaactcaaagcacaatataatatagcttttt---------tgtctaaaacctatattatccaatatcctataattttta 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||         | ||||||| |||||||||||||||||||||||||||||    
T  7970196 taattcaacaaggaataaagtaaactcaaagcacaatataatatagctttttttttttttctttctaaaagctatattatccaatatcctataattttta 7970295  T
Q  396 ttgagttttcgtaggtttcttcctttggaggtaatcatgttccaagtacttttatagactaaatacagacccttctcccgacaacaaccaactgaccaag 495  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7970296 ttgagttttcgtaggtttcttccctcggaggtaatcatgttccaaatacttttatagactaaatacagacccttctcccgacaacaaccaactgaccacg 7970395  T
Q  496 gcttatccaatcaaatgaagttggctacatggatcaaacgacaccataatgttttatcat 555  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7970396 gcttatccaatcaaatggagttggctacatggatcaaacgacaccataatgttttatcat 7970455  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 554
Target Start/End: Original strand, 37042701 - 37042737
Alignment:
Q  518 ggctacatggatcaaacgacaccataatgttttatca 554  Q
    ||||||||||||||||||||||||||||||| |||||    
T  37042701 ggctacatggatcaaacgacaccataatgttctatca 37042737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 546
Target Start/End: Original strand, 44719398 - 44719426
Alignment:
Q  518 ggctacatggatcaaacgacaccataatg 546  Q
    |||||||||||||||||||||||||||||    
T  44719398 ggctacatggatcaaacgacaccataatg 44719426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 555
Target Start/End: Original strand, 48174131 - 48174167
Alignment:
Q  519 gctacatggatcaaacgacaccataatgttttatcat 555  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  48174131 gctacatggatcaaatgacgccataatgttttatcat 48174167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 490 - 555
Target Start/End: Complemental strand, 21078190 - 21078125
Alignment:
Q  490 accaaggcttatccaatcaaatgaagttggctacatggatcaaacgacaccataatgttttatcat 555  Q
    |||||| ||||||| |  ||||||||| |||||||||||||||| ||| |||||||||| ||||||    
T  21078190 accaagccttatcccactaaatgaagtcggctacatggatcaaatgacgccataatgttctatcat 21078125  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 518 - 555
Target Start/End: Complemental strand, 32945493 - 32945456
Alignment:
Q  518 ggctacatggatcaaacgacaccataatgttttatcat 555  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  32945493 ggctacatggatcaaacgacaccataatgttctatcat 32945456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 511 - 555
Target Start/End: Complemental strand, 38657095 - 38657051
Alignment:
Q  511 tgaagttggctacatggatcaaacgacaccataatgttttatcat 555  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||||    
T  38657095 tgaagttggctacatgaatcaaacgacatcataatgttctatcat 38657051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 553
Target Start/End: Complemental strand, 29922557 - 29922494
Alignment:
Q  490 accaaggcttatccaatcaaatgaagttggctacatggatcaaacgacaccataatgttttatc 553  Q
    |||||||||||||| | ||| ||| |||||||||||||||||||  || |||||||||| ||||    
T  29922557 accaaggcttatcccaccaagtgaggttggctacatggatcaaattacgccataatgttctatc 29922494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 683735 - 683775
Alignment:
Q  515 gttggctacatggatcaaacgacaccataatgttttatcat 555  Q
    |||||||||||||||||||| ||| ||||||||| ||||||    
T  683735 gttggctacatggatcaaactacaacataatgttctatcat 683775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 41894321 - 41894281
Alignment:
Q  515 gttggctacatggatcaaacgacaccataatgttttatcat 555  Q
    |||||||||||||||||||  ||||||||||||| ||||||    
T  41894321 gttggctacatggatcaaattacaccataatgttgtatcat 41894281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 555
Target Start/End: Original strand, 14225873 - 14225910
Alignment:
Q  518 ggctacatggatcaaacgacaccataatgttttatcat 555  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  14225873 ggctacatggatcaaacgacaccatactgttctatcat 14225910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 555
Target Start/End: Complemental strand, 38869127 - 38869090
Alignment:
Q  518 ggctacatggatcaaacgacaccataatgttttatcat 555  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  38869127 ggctacatggatcaaacgacgccataatgttctatcat 38869090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 30396763 - 30396803
Alignment:
Q  515 gttggctacatggatcaaacgacaccataatgttttatcat 555  Q
    |||||||||| |||||||||| |||||||||||| ||||||    
T  30396763 gttggctacacggatcaaacgccaccataatgttctatcat 30396803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 50257818 - 50257778
Alignment:
Q  515 gttggctacatggatcaaacgacaccataatgttttatcat 555  Q
    |||||||||||||||||||  ||||||||||||| ||||||    
T  50257818 gttggctacatggatcaaattacaccataatgttctatcat 50257778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Original strand, 33118206 - 33118234
Alignment:
Q  515 gttggctacatggatcaaacgacaccata 543  Q
    |||||||||||||||||||||||||||||    
T  33118206 gttggctacatggatcaaacgacaccata 33118234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 523 - 555
Target Start/End: Complemental strand, 55244518 - 55244486
Alignment:
Q  523 catggatcaaacgacaccataatgttttatcat 555  Q
    |||||||||||||||||||||||||| ||||||    
T  55244518 catggatcaaacgacaccataatgttctatcat 55244486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 555
Target Start/End: Complemental strand, 6219213 - 6219173
Alignment:
Q  515 gttggctacatggatcaaacgacaccataatgttttatcat 555  Q
    |||||||||||||||||||  ||||||||||||| ||||||    
T  6219213 gttggctacatggatcaaattacaccataatgttctatcat 6219173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 555
Target Start/End: Original strand, 37470171 - 37470207
Alignment:
Q  519 gctacatggatcaaacgacaccataatgttttatcat 555  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  37470171 gctacatggatcaaactacaccataatgttctatcat 37470207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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