View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16720_low_33 (Length: 221)
Name: NF16720_low_33
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_low_33 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0190 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 7655698 - 7655489
Alignment:
| Q |
12 |
ataggtcgttgaattccatttggaaaccaacgctctagcgttggggagttagatatttgatgatgacaaccacgtgacatttcagcccacgaattgatga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7655698 |
ataggtcgttgaattccatttggaaaccaacgctccagcgttggggagttagatatttgatgatgacaaccacgtgacatttcagcccacgaattgatga |
7655599 |
T |
|
| Q |
112 |
aatgccacgtggactgcccgtcagctacaacatggttgaaattaaagccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttt |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7655598 |
aatgccacgtggactgtccgtcagctacgacatggttgaaattaaagccaatgaagatgccgtcaactagctccgtgacttgaacagccaacaatggttt |
7655499 |
T |
|
| Q |
212 |
tgatgtgcct |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
7655498 |
tgatgtgcct |
7655489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 7637625 - 7637837
Alignment:
| Q |
12 |
ataggtcgttgaattccatttggaaaccaacgctctagcgttggggagttagatatttgatgatg---acaaccacgtgacatttcagcccacgaattga |
108 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||||| ||||||||||| ||||||| |
|
|
| T |
7637625 |
ataggccgttgaacaccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgagatttcagcccaggaattga |
7637724 |
T |
|
| Q |
109 |
tgaaatgccacgtggactgcccgtcagctacaacatggttgaaatta-aagccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatg |
207 |
Q |
| |
|
||||||||||| ||||| |||||| | ||||||||||| |||| | | |||||||| || |||||||||||||| || |||||||| |||||||||| |
|
|
| T |
7637725 |
tgaaatgccacacggactttccgtcaacgacaacatggtt-aaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatg |
7637823 |
T |
|
| Q |
208 |
gttttgatgtgcct |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7637824 |
gttttgatgtgcct |
7637837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 7606801 - 7607006
Alignment:
| Q |
19 |
gttgaattccatttggaaaccaacgctctagcgttggggagttagatatttgat---gatgacaaccacgtgacatttcagcccacgaattgatgaaatg |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||| || |||||||||| | |||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
7606801 |
gttgaataccatttggaaaccaacgctctagtgttgggggtttggatatttgatcaccacaacaaccgcgtgatatttcagcccatgaattgatgaaatg |
7606900 |
T |
|
| Q |
116 |
ccacgtggactgcccgtcagctacaacatggttgaaattaaagccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgat |
215 |
Q |
| |
|
|||| ||||| |||||| | |||||||||||||| | |||||||| || |||||||||||||| || | |||||||||||||||||||||||| |
|
|
| T |
7606901 |
ccacacggactttccgtcaacgacaacatggttgaaggagcaaccaatgaaaataccgtcaactagctccgttatttgaacagccaacaatggttttgac |
7607000 |
T |
|
| Q |
216 |
gtgcct |
221 |
Q |
| |
|
|||||| |
|
|
| T |
7607001 |
gtgcct |
7607006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 7615805 - 7616002
Alignment:
| Q |
27 |
ccatttggaaaccaacgctctagcgttggggagttagatatttgatgatg---acaaccacgtgacatttcagcccacgaattgatgaaatgccacgtgg |
123 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||||| ||||||||||| |||||||||||||||||| | |
|
|
| T |
7615805 |
ccatttggaaaccaacgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcagcccatgaattgatgaaatgccacacag |
7615904 |
T |
|
| Q |
124 |
actgcccgtcagctacaacatggttgaaattaaagccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgatgtgcct |
221 |
Q |
| |
|
||| |||||| | |||||||||||||| | ||||| || || |||||||||||||| || |||||||| |||||||| |||||||| |||||| |
|
|
| T |
7615905 |
actctccgtcaacgacaacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaactgccaacaacggttttgaggtgcct |
7616002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 7629186 - 7629391
Alignment:
| Q |
19 |
gttgaattccatttggaaaccaacgctctagcgttggggagttagatatttgatgatgacaaccac---gtgacatttcagcccacgaattgatgaaatg |
115 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||| | |||||||||||||||||||||| || |||| ||||||||||| |||||||||||||| |
|
|
| T |
7629186 |
gttgaataccatttggaaaccaacgttcagatgttggaggtttagatatttgatgatgacaacaactacgtgagatttcagcccatgaattgatgaaatg |
7629285 |
T |
|
| Q |
116 |
ccacgtggactgcccgtcagctacaacatggttgaaattaaagccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgat |
215 |
Q |
| |
|
|||| ||||| |||||| | |||||||||||||| | | ||||| |||| |||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
7629286 |
ccacacggactttccgtcaacaacaacatggttgaatgtgcaaccaataaagacaccgtcaactagctccgttacttgaacagccaacaatggttttgac |
7629385 |
T |
|
| Q |
216 |
gtgcct |
221 |
Q |
| |
|
|||||| |
|
|
| T |
7629386 |
gtgcct |
7629391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 39098372 - 39098437
Alignment:
| Q |
156 |
aagccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgatgtgcct |
221 |
Q |
| |
|
||||||||||| || || ||||| ||||| || |||||||| || | ||||||||||||||||||| |
|
|
| T |
39098372 |
aagccaatgaaaataccatcaacaagctcagtaacttgaactgcaagcaatggttttgatgtgcct |
39098437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 8910709 - 8910525
Alignment:
| Q |
30 |
tttggaaaccaacgctctagcgttggggagttagatatttgatgatg---acaaccacgtgacatttcagcccacgaattgatgaaatgccacgtggact |
126 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||| ||| ||||| |||||| ||||||||||| ||||| |||||||||||| ||||| |
|
|
| T |
8910709 |
tttggaaaccaacgctctagtgttgggggtttagatatttgataatgacaacaactacgtgagatttcagcccaggaattaatgaaatgccacacggact |
8910610 |
T |
|
| Q |
127 |
gcccgtcagctacaacatggttgaaatta-aagccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttt |
211 |
Q |
| |
|
|||||| | ||||||||||| |||| | | |||||||| || |||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
8910609 |
ttccgtcaacgacaacatggtt-aaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttt |
8910525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 8935641 - 8935450
Alignment:
| Q |
33 |
ggaaaccaacgctctagcgttggggagttagatatttgatgatgacaaccac---gtgacatttcagcccacgaattgatgaaatgccacgtggactgcc |
129 |
Q |
| |
|
||||||||||| ||||| ||||| | |||||||||||||||||||||| || |||| ||||||||||| |||||||||||||||||| |||| | |
|
|
| T |
8935641 |
ggaaaccaacgttctagtgttggaggtttagatatttgatgatgacaacaactacgtgagatttcagcccaagaattgatgaaatgccacacagactttc |
8935542 |
T |
|
| Q |
130 |
cgtcagctacaacatggttgaaatta-aagccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgatgtgcct |
221 |
Q |
| |
|
||||| ||| | ||||| |||| | | |||||||| || ||||||| || ||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
8935541 |
cgtcaatgacagcgtggtt-aaatgagcaaccaatgaaaataccgtcaattaactcagttacttgaactgccaacaatggttttgatgtgcct |
8935450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 8934669 - 8934509
Alignment:
| Q |
64 |
atatttgatgatgacaaccac---gtgacatttcagcccacgaattgatgaaatgccacgtggactgcccgtcagctacaacatggttgaaattaa-agc |
159 |
Q |
| |
|
|||||||||||||||||| || |||| ||||||||||| |||||||||||||||||| |||| |||||| ||| | ||||| |||| | | | |
|
|
| T |
8934669 |
atatttgatgatgacaacaactacgtgagatttcagcccatgaattgatgaaatgccacacagactttccgtcaatgacagcgtggtt-aaatgagcaac |
8934571 |
T |
|
| Q |
160 |
caatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgatgtgcct |
221 |
Q |
| |
|
||||||| || ||||||| || ||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
8934570 |
caatgaaaataccgtcaattaactccgttacttgaactgccaacaatggttttgatgtgcct |
8934509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 40146940 - 40146738
Alignment:
| Q |
19 |
gttgaattccatttggaaaccaacgctctagcgttggggagttagatatttgatgatgacaaccacgtgacatttcagcccacgaattgatgaaatgcca |
118 |
Q |
| |
|
||||||| ||| ||||||||||||| ||||||||| | || |||| ||||| ||||||||| || |||| ||||| ||||| |||||| |||| |
|
|
| T |
40146940 |
gttgaataccacttggaaaccaacgttctagcgttatgagtttggatacttgattgcaacaaccacgcgagattttcgcccatgaattaatgaaaagcca |
40146841 |
T |
|
| Q |
119 |
cgtggactgcccgtcagctacaacatggttgaaattaaagccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgatgtg |
218 |
Q |
| |
|
||||||| |||||| | || ||||||| || |||| |||||||||| ||||||||||| |||||| ||||| ||||| |||||||||| ||||||| |
|
|
| T |
40146840 |
tgtggactctccgtcaacaaccgcatggttaaatgtaaaaccaatgaagaagccgtcaactaactctgtcacttgcacagctaacaatggttgtgatgtg |
40146741 |
T |
|
| Q |
219 |
cct |
221 |
Q |
| |
|
||| |
|
|
| T |
40146740 |
cct |
40146738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 8103105 - 8103246
Alignment:
| Q |
80 |
accacgtgacatttcagcccacgaattgatgaaatgccacgtggactgcccgtcagctacaacatggttgaaattaaagccaatgaagatgccgtcaact |
179 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| ||| | || || ||| | || |||||||| ||| |||| ||||| ||||||||||||||| |
|
|
| T |
8103105 |
accacgtgagatttcagcccacgaattaatgaaataccatgccgaagttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaact |
8103204 |
T |
|
| Q |
180 |
agctctgtgacttgaacagccaacaatggttttgatgtgcct |
221 |
Q |
| |
|
| |||||| ||||| || || |||||||||| |||||||||| |
|
|
| T |
8103205 |
aactctgtcacttgcacggcaaacaatggttgtgatgtgcct |
8103246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 6501119 - 6501277
Alignment:
| Q |
63 |
gatatttgatgatgacaaccacgtgacatttcagcccacgaattgatgaaatgccacgtggactgcccgtcagctacaacatggttgaaattaaagccaa |
162 |
Q |
| |
|
|||||||||| | |||||||||||| ||||||||||| ||| |||| ||||||||| |||||| || ||| || ||||||||||| |||| |||| |
|
|
| T |
6501119 |
gatatttgattacaacaaccacgtgaaatttcagcccaggaactgataaaatgccacatggactttccaccagtgaccacatggttgaatctaaacccaa |
6501218 |
T |
|
| Q |
163 |
tgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgatgtgcct |
221 |
Q |
| |
|
| |||| ||| |||||| |||||| ||||| || || | ||||||||||||| ||||| |
|
|
| T |
6501219 |
taaagacaccgccaactaactctgtcacttgcactgcaagcaatggttttgatatgcct |
6501277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 5071 - 5099
Alignment:
| Q |
90 |
atttcagcccacgaattgatgaaatgcca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5071 |
atttcagcccacgaattgatgaaatgcca |
5099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University