View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_low_5 (Length: 522)
Name: NF16720_low_5
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 17 - 499
Target Start/End: Complemental strand, 53492096 - 53491611
Alignment:
| Q |
17 |
cacatctactttatattggaacttgtttatagtcccattttagggtgcttattcaaattttgattgcaggagtcgtgagttcctttggcaagaaggtcac |
116 |
Q |
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| T |
53492096 |
cacatctactttatattggaacttgtttatagtcccattttagggtgcttattcaaattttgattgcaggagtcgtgagttcctttggcaagaaggtcac |
53491997 |
T |
|
| Q |
117 |
agtgcttttgcaacagaggatgaagcacatgcagaggtattccgtc---tagttattttaggaatctgccttaatatatgcatctttggcatctgtaatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491996 |
agtgcttttgcaacagaggatgaagcacatgcagaggtattccgtcaagtagttattttaggaatctgccttaatatatgcatctttggcatctgtaatg |
53491897 |
T |
|
| Q |
214 |
agtatttgaggcctttcctcctgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491896 |
agtatttgaggcctttcctcctgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaag |
53491797 |
T |
|
| Q |
314 |
tttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagctttt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491796 |
tttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagctttt |
53491697 |
T |
|
| Q |
414 |
aatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagc |
499 |
Q |
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| T |
53491696 |
aatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagc |
53491611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 235 - 499
Target Start/End: Complemental strand, 53499468 - 53499204
Alignment:
| Q |
235 |
tgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggta |
334 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
53499468 |
tgttcagttttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgcttgggacaaaagtttgctgaaaagttcgaggta |
53499369 |
T |
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| Q |
335 |
aaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaa |
434 |
Q |
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| T |
53499368 |
aaatttgaagataagaagggagagaaagcaatggtttggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaa |
53499269 |
T |
|
| Q |
435 |
tggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagc |
499 |
Q |
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|||||| | |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
53499268 |
tggaagaactccttttatgtacgattgcatttatattttagtccgcttatttaacagattggagc |
53499204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 53500085 - 53499888
Alignment:
| Q |
26 |
tttatattggaacttgtttatagtcccattttagggtgcttattcaaattttgattgcaggagtcgtgagttcctttggcaagaaggtcacagtgctttt |
125 |
Q |
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||||||||| |||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
53500085 |
tttatattgaaacttgttcatagtcccatttt-gggtgcttatacaaattttgattgcaggagtcgtgagtttctttggcaagaaggtcacggtgctttt |
53499987 |
T |
|
| Q |
126 |
gcaacagaggatgaagcacatgcagaggtattccgtc---tagttattttaggaatctgccttaatatatgcatctttggcatctgtaatgagtatttg |
221 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |
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| T |
53499986 |
gcaacagaggatgaagcacatgcagaggtattccatcaagtagttattttaggaatctgccttactatatgcatttttggcatctgtaatgagtctttg |
53499888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 235 - 421
Target Start/End: Complemental strand, 16070576 - 16070390
Alignment:
| Q |
235 |
tgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggta |
334 |
Q |
| |
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||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||| || |
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| T |
16070576 |
tgttcaatttttctaggcttttattccaaacattggtcgtgggatacaaggtgcagctacccattgtttgggacaaaagtttgctgagaagtttgagata |
16070477 |
T |
|
| Q |
335 |
aaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtcta |
421 |
Q |
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|| |||||||||| ||||| ||||||| |||||||||||||||| |||||||| | |||||||||||||||||||||| |||||||| |
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| T |
16070476 |
aactttgaagataagaaggtagagaaaacaatggtttggcagaactcatgggggttttctactcgaactgtaagctttcaatgtcta |
16070390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 16071267 - 16071131
Alignment:
| Q |
70 |
caaattttgattgcaggagtcgtgagttcctttggcaagaaggtcacagtgcttttgcaacagaggatgaagcacatgcagaggtattccgtc---tagt |
166 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||| |||||| ||||||||||||||| || |||| |
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| T |
16071267 |
caaattttgattgcaggagtcgtgagtttctttggcaagaaggacacagtgcttttgcttctgaggaagaagcagatgcagaggtattccatcaagtagt |
16071168 |
T |
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| Q |
167 |
tattttaggaatctgccttaatatatgcatctttggc |
203 |
Q |
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| |||||||||| ||||||||||| ||||| |||||| |
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| T |
16071167 |
tgttttaggaatttgccttaatatttgcatatttggc |
16071131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 244 - 412
Target Start/End: Original strand, 45354908 - 45355076
Alignment:
| Q |
244 |
ttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaa |
343 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||| ||||||| |||||| ||| ||| ||| |||| | |||| |
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| T |
45354908 |
ttcctaggcatttattccaaacactggtcgtggtatacaaggtgcaacttctcattgtttgggacaaaattttgctaaaatgtttgagataaactatgaa |
45355007 |
T |
|
| Q |
344 |
gatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttt |
412 |
Q |
| |
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|| ||||||||||||||||||||| |||||||| || |||| |||| ||||||||||||||||||| |
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| T |
45355008 |
aatgagaagggagagaaagcaatggtctggcagaactcgtgggcctatagtactcgaactgtaagcttt |
45355076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 51 - 159
Target Start/End: Original strand, 45354235 - 45354343
Alignment:
| Q |
51 |
ccattttagggtgcttattcaaattttgattgcaggagtcgtgagttcctttggcaagaaggtcacagtgcttttgcaacagaggatgaagcacatgcag |
150 |
Q |
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|||||| ||||| ||||| | |||||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |||| |||||| || ||| |
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| T |
45354235 |
ccatttcagggtacttataccaattttaattgcaggagtcgtgagtttctttggcaagaaggacacactgcttttgcaacaaaggaggaagcagatacag |
45354334 |
T |
|
| Q |
151 |
aggtattcc |
159 |
Q |
| |
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||||||||| |
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| T |
45354335 |
aggtattcc |
45354343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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