View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16720_low_6 (Length: 506)
Name: NF16720_low_6
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 14 - 487
Target Start/End: Complemental strand, 39733934 - 39733464
Alignment:
| Q |
14 |
aatatgtgcattttcacnnnnnnnnaaggggtgccttccagggcttggaaagagttcaaaaaagagaattgaagtcatggtggtgactacaccaaagtgg |
113 |
Q |
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| T |
39733934 |
aatatgtgcattttcacttttttttaaggggtgccttccggggcttggaaagagttcaaaaaagagaattgaagtcatggtggtgactacaccaaagtgg |
39733835 |
T |
|
| Q |
114 |
ctgctctctcatgttatctcttctttctctcccacatttttctctcataaactacccaaaagtcatggtgagtttcctgcggtaaaggtagaggatactt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39733834 |
ctgctctctcatgttatctcttctttctctcccacatttttctctcataaactacccaaaagtcatggtgagtttcccgcggtaaaggtagaggatactt |
39733735 |
T |
|
| Q |
214 |
ttccacagggtagttagacccttcttttattcaacatgtcaatactaacaaaagtctattgaagacaagtaatatgattgaggatataaggatgacttgg |
313 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733734 |
ttccactgggtagttagacccttcttttattcaacatgtcaatactaacaaaagtctattgaagacaagtaatatgattgaggatataaggatgacttgg |
39733635 |
T |
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| Q |
314 |
cggctagggagtgataaggaggttggctagggagtgataaggaggtcaagggttcaaccccactgccaacatatataatactaacaataccaacattgac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733634 |
cggctagggagtgataaggaggttggctagggagtgataaggaggtcaagggttcaaccccactgccaacatatataatactaacaataccaacattgac |
39733535 |
T |
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| Q |
414 |
aatttaaattnnnnnnnnnnnnngactataattattttcagattttgatccaaaaatatatcttatcagggaaa |
487 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733534 |
aatttaaatt-aaaaaaaaaaaagac--taattattttcagattttgatccaaaaatatatcttatcagggaaa |
39733464 |
T |
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