View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16720_low_7 (Length: 486)
Name: NF16720_low_7
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Original strand, 12691613 - 12692074
Alignment:
| Q |
11 |
gtgagaagaaaaagggtaaagggaatactatttcagcaagaacactaacagcaaatgttcatcttctatgtggtaataatttctaaactcatatttattt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12691613 |
gtgagaagaaaaagggtaaagggaatactatttcagcaagaacactaacagcaaatgttcatcttctatgtggtaataatttctaaactcatatttattt |
12691712 |
T |
|
| Q |
111 |
ttgtaatgctacctacatttggtaacccttctcgaattttaaaaatgttgagacaaagatttctttttcttatttatcattcttaaacaaaacatcaaca |
210 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12691713 |
ttgtcatgctacctacatttggtaacccttctcgaattttaaaaatgttgaatcaaagatttctttttcttatttatc-ctcttaaacaaaacatcaaca |
12691811 |
T |
|
| Q |
211 |
gataaagaaaaaaccagtgaatcaattgtttatttgttacagataatgggaactagatatttccattatcttaaaactttatttatttannnnnnngaca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12691812 |
gataaagaaaaaaccagtgaatcaattgtttatttgttacagataatgggaactagatatttccattatcttaaaactttatttatttatttttttgaca |
12691911 |
T |
|
| Q |
311 |
aatctaaatgggaaggaaatatacgcgggactaaaccaatacaagtaaattgaaatgttaaactgaatggtacgattaaccctcaatgtaagagtattta |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12691912 |
aatctaaatgggaaggaaatatacgcgggactaaaccaatacaagtaaattgaaatgttaaactgaatggtacgattaaccctcaatgtaagagcattta |
12692011 |
T |
|
| Q |
411 |
catatattattattaattttttactggctatcctattattgttggctgttagacttttgcttc |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12692012 |
catatattattattaattttttactggctatcctattattgttggctgttagacctttgcttc |
12692074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University