View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16720_low_9 (Length: 453)
Name: NF16720_low_9
Description: NF16720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16720_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Complemental strand, 43612823 - 43612396
Alignment:
| Q |
10 |
gcagagagttttaacaaagatggtccttacattgagctggttacttctcccaataatcctgatggatatacaaggaaatcagtagtgaaccgaaaccaag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43612823 |
gcagagagttttaacaaagatggtccttacattgagctggttacttctcctaataatcctgatggatatacaaggaaatcagtagtgaaccgaaaccaag |
43612724 |
T |
|
| Q |
110 |
gactattaatccatgaccttgcctattattggccacaatacactccaatactatttgcttcagattatgatcttactcttttcactgtctcaaaaagcac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43612723 |
gactattaatccatgaccttgcctattattggccacaatacactccaatactatttgcttcagattatgatcttactcttttcactgtctcaaaaagcac |
43612624 |
T |
|
| Q |
210 |
cggtcacgctggaacgcgcatagggtaagctcgtaatactacttggtcacactcaattatgtgtgtggagtgggttttggtcaattaagatcacagttaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
43612623 |
cggtcacgctggaacgcgcatagggtaagcctgtaatactacttggtcacactcaattatgtatgtggagtggtttttggtcaattaaaatcacagttaa |
43612524 |
T |
|
| Q |
310 |
ttggttaataacataaaaataagacatgtataaccacttttggaattgattaagatgggggatggaaatcagggtcacattttgagtcgctgggtacatg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43612523 |
ttggttaataacataaaaataagacatgtataaccacttttggaattgattaagatgtgggatggaaatcagggtcacattttgagtcgctgggtacatg |
43612424 |
T |
|
| Q |
410 |
ttaagagtctcgcattgaacgagataac |
437 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
43612423 |
ttaagagtctcgcattgaacgagataac |
43612396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 34686868 - 34686655
Alignment:
| Q |
25 |
aaagatggtccttacattgagctggttacttctcccaataatcctgatggatatacaaggaaatcagtagtgaaccgaaaccaaggactattaatccatg |
124 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| || ||||||||||||||| || ||||| || || || ||| |||||||| | | |||| |
|
|
| T |
34686868 |
aaagatggtccctacattgagctggtaacttcaccaaataatcctgatggacatgtgaggaagtctaaggtcaatagaagtcaaggacttctggttcatg |
34686769 |
T |
|
| Q |
125 |
accttgcctattattggccacaatacactccaatactatttgcttcagattatgatcttactcttttcactgtctcaaaaagcaccggtcacgctggaac |
224 |
Q |
| |
|
| |||||||| || ||||| ||||||||||| ||| || |||| ||| ||||||| || ||||| |||||||| |||||||| ||||| ||||||| |
|
|
| T |
34686768 |
atcttgcctactactggccgcaatacactcctatatcatcgccttctgatcatgatctaaccctttttactgtctccaaaagcactggtcatgctggaat |
34686669 |
T |
|
| Q |
225 |
gcgcatagggtaag |
238 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34686668 |
gcgcatagggtaag |
34686655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University