View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16721_high_1 (Length: 573)
Name: NF16721_high_1
Description: NF16721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16721_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 15 - 562
Target Start/End: Original strand, 6289857 - 6290402
Alignment:
| Q |
15 |
tcagaaactacctctaagttgaaatttaaactttaatttatcacattatgagattctaaccccttcagctagacaacgt-tgttggttcatgtgtatgtt |
113 |
Q |
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| T |
6289857 |
tcagaaactacctctaagttgaaatttaaactttaatttatcacattatgagattctaaccccttcagctagacaacgtctgttggttcatgtgtatgct |
6289956 |
T |
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| Q |
114 |
ttcgatcata-aaaaagcaatatgatagatatattgagtttattaagttatcannnnnnnnaagcaagggaaattctcattatttaatttcaatgcagat |
212 |
Q |
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| T |
6289957 |
ttcgatcatacaaaaagcaatatgatagatatatcgagtttattaagttatcattttttttaagcaaggtaaattctcattatttaatttcaatgcagat |
6290056 |
T |
|
| Q |
213 |
tcttgaagaagaacccaacaagaactatttttcaccttggtgtgtgatacccatgatatttaacgccatattggaactcataaggagctttaccattgcc |
312 |
Q |
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| T |
6290057 |
tcttgaagaagaacccaacaagaactatttttcaccttggtgtgtgatacccatgatatttaatgccatattggaactcataaggagctttaccattgcc |
6290156 |
T |
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| Q |
313 |
tatagaaatggacctcactatagagaaggatggtttctcttcttctttaggatggttggtttactaattccaggattacctgctcatggtccccaagatt |
412 |
Q |
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| T |
6290157 |
tatagaaatggacctcactatagagaaggatggtttctcttcttctttaggatggttggtttactaattccaggattacctgctcatggtccccaagatt |
6290256 |
T |
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| Q |
413 |
atatcaattcaactcttctcggatccattgaaagacatttcaaagaagactgatgtatcaatatgtgtcaatcgatcgataataagcttataataaagca |
512 |
Q |
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| T |
6290257 |
atatcaattcaactcttctcggatccattgaaagacatttcaaagaagactgatgtatcaatatgtgtca----atcgataataagcttataataaagca |
6290352 |
T |
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| Q |
513 |
tgttaatttcatgcttcaatttgccaatgcaaagttgttattttagaatt |
562 |
Q |
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| T |
6290353 |
tgttaatttcatgcttcaatttgccaatgcaaagttgttattttataatt |
6290402 |
T |
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