View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16721_low_2 (Length: 470)
Name: NF16721_low_2
Description: NF16721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16721_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 3 - 455
Target Start/End: Original strand, 31593896 - 31594348
Alignment:
| Q |
3 |
acactagttaaagggttgttcctattcaaagtaccgcgttcgattagaatcccaacagaacaaggtgccgttctgagcaactggcgatttaaagctcgaa |
102 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31593896 |
acactagttaaagggttgttcctattcaaagcaccgcgttcgattagaatcccaacagaacaaggtgccgttctgagcaactggcgatttaaagctcgaa |
31593995 |
T |
|
| Q |
103 |
ccgggtgtgcagattctataattccattaggtctccattgtctatgaaaaggcacaattaacaaacacactctcttttcagcaacttgcatacatatttc |
202 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31593996 |
ccgggtgtgcagattctgtaattccgttaggtctccattgtctatgaaaaggcacaatcaacaaacacactctcttttcagcaacttgcatacatatttc |
31594095 |
T |
|
| Q |
203 |
atcatgcattgtctcataaggtgagatcgacgtgaagattttcacaaccacgctattctctttttgttgctcatatgatctaaaggcgtttattatgcgt |
302 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31594096 |
atcatgcattgtctcataaggcgagatcgacgtgaagattttcacaaccacactattctctttttgttgctcatatgatctaaaggcgtttattatgcgt |
31594195 |
T |
|
| Q |
303 |
cttgaataagaagagtgtgacgacttagtcttctcatatattggttgatgatctatgaagagtggtgtcgatcttcctgcaagttgaataagatgtagga |
402 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31594196 |
cttgaataagaagagtgtgacgacttagtcttcccatatattggttgatgatctatgaagagtggtgtcgatcttcctgcaagttgaataagatgtagga |
31594295 |
T |
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| Q |
403 |
catagaaacaaataggacttcgcaatgaagggtttgacatttcaagaagattg |
455 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31594296 |
catagaaacaaataggacttcgcagtgaagggtttgacatttcaagaagattg |
31594348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 31604146 - 31604600
Alignment:
| Q |
1 |
agacactagttaaagggttgttcctattcaaagtaccgcgttcgattagaatcccaacagaacaaggtgccgttctgagcaactggcgatttaaagctcg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
31604146 |
agacactagttaaagggttgttcctattcaaagtgccacgttcgattagaatcccaacagaacaaggtgcctttctgagcaagtggcgatttaaagctcg |
31604245 |
T |
|
| Q |
101 |
aaccgggtgtgcagattctataattccattaggtctccattgtctatgaaaaggcacaattaacaaacacactctcttttcagcaacttgcatacatatt |
200 |
Q |
| |
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|||||||||||| | |||| | ||||| |||||||||||||||||||||||||||| ||| || |||||||||||||||||||| ||||||| ||||||| |
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| T |
31604246 |
aaccgggtgtgctgcttctgtcattccgttaggtctccattgtctatgaaaaggcaaaatcaataaacacactctcttttcagctacttgcaaacatatt |
31604345 |
T |
|
| Q |
201 |
tcatcatgcattgtctcataaggtgagatcgacgtgaagattttcacaaccacgctattctctttttgttgctcatatgatctaaaggcgtttattatgc |
300 |
Q |
| |
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|||||||||||||||||| |||| |||||||| ||||| | |||||||| ||| |||| || ||||||||||||||||||||||| ||||||||| |
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| T |
31604346 |
tcatcatgcattgtctcaaaaggcgagatcgatgtgaaaagtttcacaatcacattatttgacttgtgttgctcatatgatctaaaggcatttattatgt |
31604445 |
T |
|
| Q |
301 |
gtcttgaataagaagagtgtgacgacttagtcttctcatatattggttgatgatctatgaagagtggtgtcgatcttcctgcaagttgaataagatgtag |
400 |
Q |
| |
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| T |
31604446 |
gatttgaactagaggagtgcgacgattttgtcttgttgcttgttcgttgatgatctacgaaaagtggtgctgatcttcctctaagttgaataagatgtag |
31604545 |
T |
|
| Q |
401 |
gacatagaaacaaataggacttcgcaatgaagggtttgacatttcaagaagattg |
455 |
Q |
| |
|
||||||||||||||||||| || ||| ||||||||||||||||||||||||||| |
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|
| T |
31604546 |
gacatagaaacaaataggattttccaaagaagggtttgacatttcaagaagattg |
31604600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 3 - 454
Target Start/End: Original strand, 31563012 - 31563466
Alignment:
| Q |
3 |
acactagttaaagggttgttcctattcaaagtaccgcgttcgattagaatcccaacagaacaaggtgccgttctgagcaactggcgatttaaagctcgaa |
102 |
Q |
| |
|
|||||||| | ||| || |||||| ||||||| |||||||| |||| ||||||||||||||||||||| ||||| |||| || |||||||| || |||| |
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|
| T |
31563012 |
acactagtcagaggattattcctactcaaagtgccgcgttcaattaaaatcccaacagaacaaggtgctgttctaagcagatgacgatttaatgcgcgaa |
31563111 |
T |
|
| Q |
103 |
ccgggtgtgcagattctataattccattaggtctccattgtctatgaaaaggcacaattaacaaacacactctcttttcagcaacttgcatacatatttc |
202 |
Q |
| |
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||| ||| || ||| | |||| | |||| ||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||| || |
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| T |
31563112 |
taggggctgctgactctgaagacccatctgtaatccaccgtctatgaaaaggaacaatcaacaaacaaactctcttctcagcaacttgcatacatatctc |
31563211 |
T |
|
| Q |
203 |
atcatgcattgtctcataaggtgagatcgacgtgaagattttcacaaccacgctattctctttttgttgctcatatgatctaaaggcgtttattatgcgt |
302 |
Q |
| |
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|| |||||||||||||||||| || ||||| ||||||| |||||||||||| | ||| |||||||||||||| |||||||| |||||||||||| || |
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| T |
31563212 |
attatgcattgtctcataaggagaaatcgatgtgaagagtttcacaaccacattgttcgaattttgttgctcatacgatctaaacgcgtttattatgtgt |
31563311 |
T |
|
| Q |
303 |
cttgaataa---gaagagtgtgacgacttagtcttctcatatattggttgatgatctatgaagagtggtgtcgatcttcctgcaagttgaataagatgta |
399 |
Q |
| |
|
||||||| | ||||| | | || | | | || ||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||| |
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| T |
31563312 |
tgtgaataactcgccgagtgcggtggattctccctgttgcatgttggttgatgatctatgaaaagtggagttgatcttcctctaagttgaataagatgta |
31563411 |
T |
|
| Q |
400 |
ggacatagaaacaaataggacttcgcaatgaagggtttgacatttcaagaagatt |
454 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
31563412 |
ggacatagaaacaaataggattctccaatgaagggtttgacatttcaagaagatt |
31563466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 3 - 455
Target Start/End: Original strand, 31578366 - 31578821
Alignment:
| Q |
3 |
acactagttaaagggttgttcctattcaaagtaccgcgttcgattagaatcccaacagaacaaggtgccgttctgagcaactggcgatttaaagctcgaa |
102 |
Q |
| |
|
|||||||| | ||| || |||||| ||||||| |||||||| |||| |||||||| |||||||||||| ||||||| | || || ||||| || |||| |
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| T |
31578366 |
acactagtcagaggattattcctactcaaagtgccgcgttcaattaaaatcccaatagaacaaggtgcttttctgagaagatgacggtttaatgcgcgaa |
31578465 |
T |
|
| Q |
103 |
ccgggtgtgcagattctataattccattaggtctccattgtctatgaaaaggcacaattaacaaacacactctcttttcagcaacttgcatacatatttc |
202 |
Q |
| |
|
|||| ||| || ||| ||| |||| || |||| |||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||| || |
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| T |
31578466 |
tcggggctgctgactctgaaatctcatttggaatccactgtctatgaaaaggaacaatcaacaaacaaactctcttctcagcaacttgcatacatatctc |
31578565 |
T |
|
| Q |
203 |
atcatgcattgtctcataaggtgagatcgacgtgaagattttcacaaccacgctattctctttttgttgctcatatgatctaaaggcgtttattatgcgt |
302 |
Q |
| |
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||||||||| ||||||||||| || ||||| ||||||| |||||||||||| ||||| |||||||||||||| |||||||| || ||||||||| || |
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| T |
31578566 |
atcatgcatcgtctcataaggagaaatcgatgtgaagagtttcacaaccacattattcgaattttgttgctcatacgatctaaaagcatttattatgtgt |
31578665 |
T |
|
| Q |
303 |
cttgaataa---gaagagtgtgacgacttagtcttctcatatattggttgatgatctatgaagagtggtgtcgatcttcctgcaagttgaataagatgta |
399 |
Q |
| |
|
||||||| | ||||| | | || ||| | || ||||||||||||||||||| | |||||| || |||| ||||||||||||||||| |
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|
| T |
31578666 |
tgtgaataactcgtcgagtgcggtggattctccttgttgcatgttggttgatgatctatgaaaactggtgttactcgtcctctaagttgaataagatgta |
31578765 |
T |
|
| Q |
400 |
ggacatagaaacaaataggacttcgcaatgaagggtttgacatttcaagaagattg |
455 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||| |||||||||||||||||||| |
|
|
| T |
31578766 |
ggacatagaaacaaattggatttttcaatgaagggcttgacatttcaagaagattg |
31578821 |
T |
|
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