View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16722_high_1 (Length: 735)
Name: NF16722_high_1
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16722_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 26647976 - 26647619
Alignment:
| Q |
19 |
ccttcatgagttcaaattatattcagtcttgtgaatatcaccctctttcattcgaatctgatgataccctgatttcagcatactctccctcaggttgagt |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26647976 |
ccttcatgagttcaaa----attcagtcttgtgaatatcaccctctttcattcgaatctgatgataccctgatttcagcatactctccctcaggttgagc |
26647881 |
T |
|
| Q |
119 |
tcgaaatgccaaataattgacacaaacaatagtagcaaaaagatataacagattatggtggcagctagtgatattttttatgtgaactgtgggataaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26647880 |
tcgaaatgccaaataattgacacaaacaatagtagcaaaaagatataacaaattatgatggcaactagtgatattttttatgtgaactgtgggataaatt |
26647781 |
T |
|
| Q |
219 |
cccttataaatactgcaatgctaaacaatggatggattaataatctccttgcagtaatgaaatttacaaagacgataaactatcaccaagagaatgcccc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26647780 |
cccttataaatactgcaatgctaaacaatggatggattaataatctccttgcagtaatgaaatttacaaagacgataaactatcaccaagagaatgcccc |
26647681 |
T |
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| Q |
319 |
ccactgagatgagaatggttctcgctattccagtcccacttccatctccaaaaccagtatgc |
380 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26647680 |
ccactgagatgagaatggttctcactattccagtcccacttccatctccaaaaccagtatgc |
26647619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 666 - 722
Target Start/End: Complemental strand, 26647615 - 26647559
Alignment:
| Q |
666 |
gtatgtgcataccatgatgtacatggaagagtaaaacataagggaatttatcagtat |
722 |
Q |
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| T |
26647615 |
gtatgtgcataccatgatgtacatggaagagtaaaacataagggaatttatcagtat |
26647559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 7e-82; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 404 - 657
Target Start/End: Complemental strand, 36992855 - 36992609
Alignment:
| Q |
404 |
aaggatacttcccagggaatatcaaaatgtgtgtaatcttactattagatggttatccttgatctcatactaattttattgatcctagtgaacttgtgta |
503 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36992855 |
aaggatacttcccagggaatatcaaattgtgtgttatcttactattagatcgttatccttgatctcatactaattttattgatcctagtgaacttgtgta |
36992756 |
T |
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| Q |
504 |
gtg--taattgtgatgaagtttataagtatgtagtcatgggaccagaaaatgacaaattgtgtgattaagttatggttttcctaaaggattaaaacttgg |
601 |
Q |
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||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| |||| |||||||||||||||||||||| | |
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| T |
36992755 |
gtgtataattgtgatgaagtttataagtatgtag-cat-------aaaaatgatgaattgtgtgattaagctatgattttcctaaaggattaaaactt-g |
36992665 |
T |
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| Q |
602 |
taagtttaaagaatatatgttgggaagctaaatattagctataagaatatctaagg |
657 |
Q |
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||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||| |
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| T |
36992664 |
taagtttaaaggatatatgttggcaagctaaatattagatataagaaaatctaagg |
36992609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 411 - 656
Target Start/End: Complemental strand, 37002771 - 37002526
Alignment:
| Q |
411 |
cttcccagggaatatcaaaatgtgtgtaatcttactattagatggttatccttgatctcatactaattttattgatcctagtgaacttgtgtagtgtaat |
510 |
Q |
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|||||||||| |||||||| |||| || ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| || |
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| T |
37002771 |
cttcccagggcatatcaaattgtgcgtgatcttactattagatggttatccttgagctcttactaattttattgatcctagtgaacttgtgcagtgttat |
37002672 |
T |
|
| Q |
511 |
tgtgatgaagtttataagtatgtagtcatgggacc-agaaaatgacaaattgtgtgattaagttatggttttcctaaaggattaaaacttggtaagttta |
609 |
Q |
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| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||||| ||||| |||||||| |
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| T |
37002671 |
tcagatgaagtttataagtatgtagtcatgggacctagaaaatgacgaattgtgtgattaagttatgattttcctaatggatttcaactt-gtaagtttt |
37002573 |
T |
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| Q |
610 |
aagaatatatgttgggaagctaaatattagctataagaatatctaag |
656 |
Q |
| |
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||||||||||||||| |||||||||||||| |||||||| ||||||| |
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| T |
37002572 |
aagaatatatgttggcaagctaaatattagatataagaaaatctaag |
37002526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 93 - 287
Target Start/End: Complemental strand, 36993343 - 36993151
Alignment:
| Q |
93 |
tcagcatactctccctcaggttgagttcgaaatgccaaataattgacacaaacaatagtagcaaaaagatataacagattatggtggcagctagtgatat |
192 |
Q |
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||||||||||||||| ||||||||| || |||| | |||||||||||||||| ||||||| ||||| ||||||||| |||||| ||||| |||||| || |
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| T |
36993343 |
tcagcatactctccc-caggttgagctctaaatactaaataattgacacaaataatagtaacaaaaggatataacaaattatgctggcaaatagtgacat |
36993245 |
T |
|
| Q |
193 |
tttttatgtgaactgtgggataaattcccttataaatactgcaatgctaaacaatggatggattaataatctccttgcagtaatgaaatttacaa |
287 |
Q |
| |
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| || |||| ||||||||| |||||||||||| ||| |||| |||| |||||||| |||||||||||||||||||||||||||| || |||||| |
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| T |
36993244 |
tattgatgttaactgtggg-taaattcccttacaaagactggaatgttaaacaatttatggattaataatctccttgcagtaatggaacttacaa |
36993151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 273 - 394
Target Start/End: Complemental strand, 36993141 - 36993021
Alignment:
| Q |
273 |
taatgaaatttacaaagacgataaactatcaccaagagaatgccccccactgagatgagaatggttctcgctattccagtcccacttccatctccaaaac |
372 |
Q |
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||||| || ||||||| | |||||||| |||| |||| ||| ||| | ||||||||||||||||||||| ||||||||||||| ||| || ||||||||| |
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| T |
36993141 |
taatggaacttacaaacatgataaactctcactaagaaaataccctc-actgagatgagaatggttctcactattccagtccctctttcaactccaaaac |
36993043 |
T |
|
| Q |
373 |
cagtatgctcttcttcacaccc |
394 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
36993042 |
cagtatgctcttcttcacaccc |
36993021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 37004121 - 37004049
Alignment:
| Q |
19 |
ccttcatgagttcaaattatattcagtcttgtgaatatcaccctctttcattcgaatctgatgataccctgatttca |
95 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |
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|
| T |
37004121 |
ccttcatgagttcaaa----attcagtcttgtgaatatcaccctctttcgtttgaatctgatgataccctaatttca |
37004049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 36993826 - 36993754
Alignment:
| Q |
19 |
ccttcatgagttcaaattatattcagtcttgtgaatatcaccctctttcattcgaatctgatgataccctgatttca |
95 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||||||| ||| |||||||||| ||| |||||||||||| |
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| T |
36993826 |
ccttcatgagttcaaatt----tcagttttttgaatatcaccctccttcgttcgaatctggtgacaccctgatttca |
36993754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 667 - 718
Target Start/End: Complemental strand, 37002510 - 37002459
Alignment:
| Q |
667 |
tatgtgcataccatgatgtacatggaagagtaaaacataagggaatttatca |
718 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
37002510 |
tatgtgcatatcatgatgtacatgtcagagtaaaacagaagggaatttatca |
37002459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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