View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16722_high_13 (Length: 383)
Name: NF16722_high_13
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16722_high_13 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 383
Target Start/End: Original strand, 8349002 - 8349377
Alignment:
| Q |
8 |
tgagatgaacgatcattgttatcggtagcaaaagaagattgttggtaagttcaagaaaaataacacaaagtgaaacagtcattctcattgaccctgccat |
107 |
Q |
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| T |
8349002 |
tgagaagaacgatcattgttatcggtagcaaaagaagattgttggtaagttcaagaaagataacacaaagtgaaacagtcattctcattgaccctgccat |
8349101 |
T |
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| Q |
108 |
caaggaagctgcaccaagaacagctaacaaaccatgatcaatatttgtgtaagacctcattatgattccgaggagacgtccataacctgaaccgattaat |
207 |
Q |
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| T |
8349102 |
caaggaagctgcaccaagaacagctaacaaaccatgatcaatatttgtgtaaggcctcattatgattccgaggagacgtccataacccgaaccgattaat |
8349201 |
T |
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| Q |
208 |
atgataggtnnnnnnngtcctgatggaacagcaatgccaaaagtgattaaacctaatatgcaatatagtgtgaaaaatatcaagattgaaaaaggttgat |
307 |
Q |
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| T |
8349202 |
atgataggtaaaaaaagtcctgatggaacagcaatgccaaaagtgattaaacctaatatgcaatatagtgtgaaaaatatcaagattgaaaaaggttgat |
8349301 |
T |
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| Q |
308 |
attcatgaggtgtgtttgttgagaaaatgtttctaactgcatcatcatttgttgtgagaagaagagtagctaggtc |
383 |
Q |
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| T |
8349302 |
attcatgaggtgtgtttgttgagaaaatgtttctaactgcatcatcatttgttgtgagtagaagagtagctaggtc |
8349377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 10399892 - 10399770
Alignment:
| Q |
14 |
gaacgatcattgttatcggtagcaaaagaagattgttggtaagttcaagaaaaataacacaaagtgaaacagtcattctcattgaccctgccatcaagga |
113 |
Q |
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| T |
10399892 |
gaacaatcattgttattggcagtagaagcagattgctggtaagttcaaggaaaatcacacaaagggatacagtcatcctcatggaaccagccatgaggga |
10399793 |
T |
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| Q |
114 |
agctgcaccaagaacagctaaca |
136 |
Q |
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| T |
10399792 |
ggctgcaccaagtacagcaaaca |
10399770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 10399603 - 10399529
Alignment:
| Q |
303 |
ttgatattcatgaggtgtgtttgttgagaaaatgtttctaactgcatcatcatttgttgtgagaagaagagtagc |
377 |
Q |
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| T |
10399603 |
ttgatattcatgaggtgtgttacttgagaatatgtttcgaacagcatcgtcattagtcgtaagcagtagagtagc |
10399529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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