View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16722_high_24 (Length: 217)
Name: NF16722_high_24
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16722_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 7631927 - 7632108
Alignment:
| Q |
19 |
gtatcgtcggtgtagctaaaagttagtacttttatatcttctgttgtgaagcataaattacacgatcttaaaatttccctaaaatatctaaaaggtacgg |
118 |
Q |
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| T |
7631927 |
gtatcgttggtgtagctaaa-gttagtacttttatatcttctgttgtgaagcataaagtacacgatcttaaaatttccctaaaatatctaaaaggtacgg |
7632025 |
T |
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| Q |
119 |
atgtgttacccaataggttcactgcatcacatacattaaacaagctgcatttaaaatttcctcgcgctctagatattcctagt |
201 |
Q |
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| T |
7632026 |
atgtgttacccaataggttcactgcatcacatacattaaacaagctgcatttaaaatttcctcgcgctctagatattcctagt |
7632108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 7638634 - 7638812
Alignment:
| Q |
22 |
tcgtcggtgtagctaaaagttagtacttttatatcttctgttgtgaagcataaattacacgatcttaaaatttccctaaaatatctaaaaggtacggatg |
121 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| || |||||||| |||||||| ||| |
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| T |
7638634 |
tcgtcggtgtaggtaaa-gttagtacttttatatcttctgttgtgaagcacaaagtacaagatcttaaaatttccgtagaatatctagaaggtacgtatg |
7638732 |
T |
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| Q |
122 |
tgttacccaataggttcactgcatcacatacattaaacaagctgcatttaaaatttcctcgcgctctagatattcctagt |
201 |
Q |
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||||||||||||||||||| || ||| || |||||||||||||||||||| |||||||| || | ||| ||||||||||| |
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| T |
7638733 |
tgttacccaataggttcacagcctcatatgcattaaacaagctgcatttagaatttccttgcacactacatattcctagt |
7638812 |
T |
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