View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16722_high_4 (Length: 634)
Name: NF16722_high_4
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16722_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 189 - 619
Target Start/End: Complemental strand, 39824994 - 39824564
Alignment:
| Q |
189 |
ctctcattaatcaaatctcttttcaagtttccaccatctaggttgttaatttcttctctagtttctcaatctctctatgacgcaattcacacattcacta |
288 |
Q |
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| T |
39824994 |
ctctcattaatcaaatctcttttcaagtttccaccatctaggttgttaatttcttctgtagtttctcaatctctctatgacgcaattcacacattcacta |
39824895 |
T |
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| Q |
289 |
ccttatttgcaccaaacaacaacaactttttcaaacccttcttcttccatgaacaaaaacaatcaagtaccgccagataagcctactaaaccatggttcc |
388 |
Q |
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| T |
39824894 |
ccttatttgcaccaaacaacaacaactttttcaaacccttcttcttccatgaacaaaaacaatcaagtaccgccagataagcctactaaaccatggttcc |
39824795 |
T |
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| Q |
389 |
caacatccaaagctttaactacctttggtgacacaaactgcatggaacagttacttgttcattgcgcaaacgcaatcgaaacaaacgatgtaacacttgc |
488 |
Q |
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| T |
39824794 |
caacatccaaagctttaactacctttggagacacaaactgcatggaacagttacttgttcattgcgcaaacgcaatcgaaacaaacgatgtaacacttgc |
39824695 |
T |
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| Q |
489 |
tcaacaaatcctttgggttctcaataacatagcaccacaagacggtgattcaaatcaacgcttagcttatagtttccttagagccctcacaaatcgtgca |
588 |
Q |
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| T |
39824694 |
tcagcaaatcctttgggttctcaataacatagcaccacaagacggtgattcaaatcaacgcttagcttatagtttccttagagccctcacaaatcgtgca |
39824595 |
T |
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| Q |
589 |
gtgaaaaccggtacctgtaaaatgctagtag |
619 |
Q |
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| T |
39824594 |
gtgaaaaccggtacctgtaaaatgctagtag |
39824564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 39825156 - 39825021
Alignment:
| Q |
25 |
tttgacgtctctgcaaagtaatctcacccgcaattttcactgcatcggtctcatttcgttgtaatataaaggttcactccgtcgacctcaaggttatagc |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
39825156 |
tttgacgtctctgcaaagtaatctcacccgcaattttcactgcatcggtctcatttcgttgtaatataaaggttcactccgtcggcctcaaggtcatagc |
39825057 |
T |
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| Q |
125 |
ataactgcaaccacaatttaaaaccagggtatcaac |
160 |
Q |
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||| || ||||| ||||||||||||||||||||||| |
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| T |
39825056 |
atatctacaaccgcaatttaaaaccagggtatcaac |
39825021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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