View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16722_high_8 (Length: 522)

Name: NF16722_high_8
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16722_high_8
NF16722_high_8
[»] chr1 (15 HSPs)
chr1 (1-512)||(50751056-50751567)
chr1 (368-477)||(19413103-19413212)
chr1 (3-153)||(19414712-19414862)
chr1 (287-335)||(6932116-6932164)
chr1 (274-325)||(5268311-5268362)
chr1 (268-323)||(28024546-28024601)
chr1 (272-333)||(5410697-5410758)
chr1 (275-312)||(7335907-7335944)
chr1 (273-312)||(4347033-4347072)
chr1 (278-312)||(40352455-40352489)
chr1 (301-335)||(47725165-47725199)
chr1 (301-335)||(47732157-47732191)
chr1 (282-335)||(47978366-47978419)
chr1 (278-326)||(27801666-27801714)
chr1 (274-306)||(37724370-37724402)
[»] chr7 (16 HSPs)
chr7 (272-335)||(45557455-45557518)
chr7 (272-331)||(29829305-29829364)
chr7 (278-325)||(117861-117908)
chr7 (274-312)||(38510377-38510415)
chr7 (272-325)||(40491668-40491721)
chr7 (278-323)||(44856735-44856780)
chr7 (259-312)||(48459752-48459805)
chr7 (273-325)||(4228603-4228655)
chr7 (279-311)||(7276053-7276085)
chr7 (272-312)||(15311230-15311270)
chr7 (274-306)||(23783202-23783234)
chr7 (273-309)||(26975314-26975350)
chr7 (278-326)||(32187001-32187049)
chr7 (273-333)||(36920171-36920231)
chr7 (278-326)||(41715718-41715766)
chr7 (272-312)||(44967413-44967453)
[»] chr4 (8 HSPs)
chr4 (278-335)||(33843807-33843864)
chr4 (273-325)||(21743088-21743139)
chr4 (278-325)||(36150629-36150676)
chr4 (279-312)||(55638782-55638815)
chr4 (274-335)||(55647993-55648054)
chr4 (278-310)||(17898085-17898117)
chr4 (272-332)||(20712749-20712809)
chr4 (278-326)||(48550242-48550290)
[»] chr8 (6 HSPs)
chr8 (272-326)||(16972005-16972059)
chr8 (273-312)||(19649229-19649268)
chr8 (272-311)||(38875211-38875250)
chr8 (209-239)||(11038125-11038155)
chr8 (209-239)||(13929819-13929849)
chr8 (278-326)||(36779439-36779487)
[»] chr6 (7 HSPs)
chr6 (278-335)||(34911039-34911095)
chr6 (266-335)||(28466916-28466985)
chr6 (266-335)||(34736748-34736817)
chr6 (211-239)||(19260995-19261023)
chr6 (269-333)||(29409257-29409321)
chr6 (259-335)||(34620963-34621039)
chr6 (259-335)||(34748400-34748476)
[»] chr3 (12 HSPs)
chr3 (272-329)||(3776612-3776669)
chr3 (272-325)||(37334976-37335029)
chr3 (273-312)||(7012675-7012714)
chr3 (272-335)||(31084241-31084304)
chr3 (279-310)||(35132231-35132262)
chr3 (273-312)||(44225600-44225639)
chr3 (278-312)||(10852740-10852774)
chr3 (278-312)||(23918882-23918916)
chr3 (279-325)||(24916581-24916627)
chr3 (278-312)||(42644302-42644336)
chr3 (278-335)||(29252129-29252186)
chr3 (279-331)||(35951128-35951180)
[»] chr2 (12 HSPs)
chr2 (272-313)||(4119381-4119422)
chr2 (278-335)||(10918652-10918709)
chr2 (272-324)||(15220804-15220856)
chr2 (272-335)||(3853943-3854006)
chr2 (273-312)||(23359955-23359994)
chr2 (278-309)||(44439350-44439381)
chr2 (278-335)||(30503303-30503360)
chr2 (267-304)||(42973014-42973051)
chr2 (272-312)||(4908880-4908920)
chr2 (279-335)||(22882875-22882931)
chr2 (272-316)||(33502324-33502368)
chr2 (272-312)||(38600468-38600508)
[»] chr5 (10 HSPs)
chr5 (273-325)||(27374236-27374288)
chr5 (273-312)||(22811075-22811114)
chr5 (286-329)||(39514933-39514976)
chr5 (209-239)||(12208955-12208985)
chr5 (301-335)||(34454048-34454082)
chr5 (274-311)||(24036623-24036660)
chr5 (275-312)||(43438619-43438656)
chr5 (277-309)||(7667751-7667783)
chr5 (209-237)||(13224732-13224760)
chr5 (272-312)||(14299416-14299456)


Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 50751567 - 50751056
Alignment:
Q  1 cagttggaaaatggatatttgatcaaacctaccctctctatgattccaactgtccttatctcaccactgcagttacttgtcaaaagaatggacggccaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50751567 cagttggaaaatggatatttgatcaaacctaccctctctatgattccaactgtccttatctcaccactgcagttacttgtcaaaagaatggacggccaga 50751468  T
Q  101 ttcggattatgagaaatggaagtggaagccattaggttgttccatcccaaggtgatgatgataacattaatttctcaaattgctacctttttattttctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  50751467 ttcggattatgagaaatggaagtggaagccattaggttgttccatcccaaggtgatgatgataacattaatttctcacattgctacctttttgttttctt 50751368  T
Q  201 ataattgcataattgattttgacatgtttggatgttctctacaattgatttttagtcgacttttatgtaactgtattcaaacataaatcactttacattt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50751367 ataattgcataattgattttgacatgtttggatgttctctacaattgatttttagtcgacttttatgtaactgtattcaaacataaatcattttacattt 50751268  T
Q  301 aactcacttttagtccgaatcaattcattcaaaataaccaaacacgcttaaatcatgctgcattttcaggtttgatgcactgaaatatcttggtaaaatg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50751267 aactcacttttagtccgaatcaattcattcaaaataaccaaacacgcttaaatcatgctgtattttcaggtttgatgcactgaaatatcttggtaaaatg 50751168  T
Q  401 agaggaaagagaatgatgttggtgggtgattctataatgagaaaccagtgggaatctcttgtatgcttagttcaaggagttattgctactgacaggaaaa 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50751167 agaggaaagagaatgatgttggtgggtgattctataatgagaaaccagtgggaatctcttgtatgcttagttcaaggagttattgcaactgacaggaaaa 50751068  T
Q  501 aagtcacctatg 512  Q
    |||||| |||||    
T  50751067 aagtcatctatg 50751056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 368 - 477
Target Start/End: Complemental strand, 19413212 - 19413103
Alignment:
Q  368 aggtttgatgcactgaaatatcttggtaaaatgagaggaaagagaatgatgttggtgggtgattctataatgagaaaccagtgggaatctcttgtatgct 467  Q
    ||||||||||||||||| | |||||| ||||||||| | |||||||| ||||||||||||||||| ||||||||||| |||||||||||| | |||||||    
T  19413212 aggtttgatgcactgaagtttcttggaaaaatgagaaggaagagaataatgttggtgggtgattcaataatgagaaatcagtgggaatctttagtatgct 19413113  T
Q  468 tagttcaagg 477  Q
    |||| |||||    
T  19413112 tagtacaagg 19413103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 19414862 - 19414712
Alignment:
Q  3 gttggaaaatggatatttgatcaaacctaccctctctatgattccaactgtccttatctcaccactgcagttacttgtcaaaagaatggacggccagatt 102  Q
    |||||||||||| | | |||| || | |||||||| |||||| | ||||| |||||||| |  ||||||||||||||||| ||||||||  |||||||||    
T  19414862 gttggaaaatgggtttatgatgaatcttaccctctttatgatcctaactgcccttatcttagtactgcagttacttgtcagaagaatgggaggccagatt 19414763  T
Q  103 cggattatgagaaatggaagtggaagccattaggttgttccatcccaaggt 153  Q
    | ||||||||||| |||||||||||||||   ||||| |||||||||||||    
T  19414762 ccgattatgagaagtggaagtggaagccaagtggttgctccatcccaaggt 19414712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 6932164 - 6932116
Alignment:
Q  287 atcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    |||| |||||||| ||||||||||||||| |||||||||||||||||||    
T  6932164 atcattttacattcaactcacttttagtcagaatcaattcattcaaaat 6932116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 5268311 - 5268362
Alignment:
Q  274 tattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 325  Q
    |||||||||| ||||||||||||||| ||||||||||||| | |||||||||    
T  5268311 tattcaaacaaaaatcactttacattcaactcacttttaggcagaatcaatt 5268362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 28024546 - 28024601
Alignment:
Q  268 taactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaa 323  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||||  |||||||    
T  28024546 taactgtatgtaaacaaaaatcactttacatttaactcacttttagtttgaatcaa 28024601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 5410697 - 5410758
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaa 333  Q
    ||||||||||||||||||| |||||||  |||||||||||| ||  ||||||||| ||||||    
T  5410697 tgtattcaaacataaatcaatttacatccaactcacttttaatcaaaatcaattctttcaaa 5410758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 7335944 - 7335907
Alignment:
Q  275 attcaaacataaatcactttacatttaactcactttta 312  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  7335944 attcaaacataaatcactttacattcaactcactttta 7335907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 4347033 - 4347072
Alignment:
Q  273 gtattcaaacataaatcactttacatttaactcactttta 312  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  4347033 gtatccaaacataaatcactttacattcaactcactttta 4347072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 40352455 - 40352489
Alignment:
Q  278 caaacataaatcactttacatttaactcactttta 312  Q
    |||||||||||||||||||||| ||||||||||||    
T  40352455 caaacataaatcactttacattaaactcactttta 40352489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 47725199 - 47725165
Alignment:
Q  301 aactcacttttagtccgaatcaattcattcaaaat 335  Q
    ||||||||||||||| |||||||||||||||||||    
T  47725199 aactcacttttagtcagaatcaattcattcaaaat 47725165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 47732191 - 47732157
Alignment:
Q  301 aactcacttttagtccgaatcaattcattcaaaat 335  Q
    ||||||||||||||| |||||||||||||||||||    
T  47732191 aactcacttttagtcagaatcaattcattcaaaat 47732157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 47978419 - 47978366
Alignment:
Q  282 cataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    |||||||||||||||||| ||||||||||||  |  |||||||||| |||||||    
T  47978419 cataaatcactttacattcaactcacttttacccaaaatcaattcactcaaaat 47978366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 27801714 - 27801666
Alignment:
Q  278 caaacataaatcactttacatttaactcacttttagtccgaatcaattc 326  Q
    ||||||||||||| ||||||| ||||||||||||| ||  |||||||||    
T  27801714 caaacataaatcaatttacatctaactcacttttaatcaaaatcaattc 27801666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 306
Target Start/End: Complemental strand, 37724402 - 37724370
Alignment:
Q  274 tattcaaacataaatcactttacatttaactca 306  Q
    |||||||||||||||||||||||||| ||||||    
T  37724402 tattcaaacataaatcactttacattaaactca 37724370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 272 - 335
Target Start/End: Original strand, 45557455 - 45557518
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    ||||| |||||| |||||||||||| || ||||||||||||||| |||||||||||||||||||    
T  45557455 tgtatccaaacacaaatcactttaccttcaactcacttttagtcagaatcaattcattcaaaat 45557518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 29829364 - 29829305
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattca 331  Q
    ||||| |||||||||||||||||||||| |||||| |||||| | |||||||||||||||    
T  29829364 tgtatccaaacataaatcactttacattcaactcatttttagccagaatcaattcattca 29829305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 117861 - 117908
Alignment:
Q  278 caaacataaatcactttacatttaactcacttttagtccgaatcaatt 325  Q
    |||||| ||| ||||||||||||||||||||||||||| |||| ||||    
T  117861 caaacaaaaaccactttacatttaactcacttttagtcggaataaatt 117908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 312
Target Start/End: Complemental strand, 38510415 - 38510377
Alignment:
Q  274 tattcaaacataaatcactttacatttaactcactttta 312  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  38510415 tattcaaacataaatcactttatattcaactcactttta 38510377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 40491668 - 40491721
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 325  Q
    ||||| |||| |||||||||||||| || |||||||||||||||  ||||||||    
T  40491668 tgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaatt 40491721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 44856780 - 44856735
Alignment:
Q  278 caaacataaatcactttacatttaactcacttttagtccgaatcaa 323  Q
    |||||||||||| ||||||||| ||||||||||||| | |||||||    
T  44856780 caaacataaatcgctttacattcaactcacttttaggcagaatcaa 44856735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 312
Target Start/End: Original strand, 48459752 - 48459805
Alignment:
Q  259 acttttatgtaactgtattcaaacataaatcactttacatttaactcactttta 312  Q
    ||||||| |||| ||||| ||||||||||||| || ||||| ||||||||||||    
T  48459752 acttttaagtaagtgtatccaaacataaatcaattcacattcaactcactttta 48459805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 4228603 - 4228655
Alignment:
Q  273 gtattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 325  Q
    |||| ||||||||||||||||| |||| |||||||||||| ||  ||||||||    
T  4228603 gtatccaaacataaatcacttttcattcaactcacttttaatcaaaatcaatt 4228655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 7276053 - 7276085
Alignment:
Q  279 aaacataaatcactttacatttaactcactttt 311  Q
    |||||||||||||||||||||||| ||||||||    
T  7276053 aaacataaatcactttacatttaaatcactttt 7276085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 15311270 - 15311230
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcactttta 312  Q
    ||||| ||||||||||||||| |||||| ||||||||||||    
T  15311270 tgtatccaaacataaatcactatacattcaactcactttta 15311230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 306
Target Start/End: Original strand, 23783202 - 23783234
Alignment:
Q  274 tattcaaacataaatcactttacatttaactca 306  Q
    |||||||||||||||| ||||||||||||||||    
T  23783202 tattcaaacataaatcgctttacatttaactca 23783234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 26975350 - 26975314
Alignment:
Q  273 gtattcaaacataaatcactttacatttaactcactt 309  Q
    |||||||||||||||||| |||||||| |||||||||    
T  26975350 gtattcaaacataaatcattttacattcaactcactt 26975314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 32187001 - 32187049
Alignment:
Q  278 caaacataaatcactttacatttaactcacttttagtccgaatcaattc 326  Q
    ||||||||||||| ||||||| ||||||||||||| ||  |||||||||    
T  32187001 caaacataaatcaatttacatctaactcacttttaatcaaaatcaattc 32187049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 36920231 - 36920171
Alignment:
Q  273 gtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaa 333  Q
    |||||||||||||||||| |||| || |||||||||||||  |  ||||||||| ||||||    
T  36920231 gtattcaaacataaatcaatttatatctaactcacttttaaccaaaatcaattctttcaaa 36920171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 41715718 - 41715766
Alignment:
Q  278 caaacataaatcactttacatttaactcacttttagtccgaatcaattc 326  Q
    ||||||||||||| ||||||| ||||||||||||| ||  |||||||||    
T  41715718 caaacataaatcaatttacatctaactcacttttaatcaaaatcaattc 41715766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 44967453 - 44967413
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcactttta 312  Q
    ||||||||||||||||||| || ||||| ||||||||||||    
T  44967453 tgtattcaaacataaatcaattcacattcaactcactttta 44967413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 33843807 - 33843864
Alignment:
Q  278 caaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||||||| |||||||    
T  33843807 caaacataaatcactttacatccaactcacttttagccagaatcaattcaatcaaaat 33843864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 21743139 - 21743088
Alignment:
Q  273 gtattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 325  Q
    ||||||||| ||||||||||||||| |||| |||||||||| |||||||||||    
T  21743139 gtattcaaatataaatcactttaca-ttaattcacttttagcccgaatcaatt 21743088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 36150629 - 36150676
Alignment:
Q  278 caaacataaatcactttacatttaactcacttttagtccgaatcaatt 325  Q
    |||||||||||||||||||||| |||||||||||| ||  ||||||||    
T  36150629 caaacataaatcactttacattcaactcacttttaatcaaaatcaatt 36150676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 55638815 - 55638782
Alignment:
Q  279 aaacataaatcactttacatttaactcactttta 312  Q
    |||||||||||| |||||||||||||||||||||    
T  55638815 aaacataaatcaatttacatttaactcactttta 55638782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 55648054 - 55647993
Alignment:
Q  274 tattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    |||||||  |||| |||||||||||| || ||||||||||||  |||||||| |||||||||    
T  55648054 tattcaattataactcactttacattcaagtcacttttagtcataatcaattaattcaaaat 55647993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 17898117 - 17898085
Alignment:
Q  278 caaacataaatcactttacatttaactcacttt 310  Q
    |||||||||||||||||||||| ||||||||||    
T  17898117 caaacataaatcactttacattcaactcacttt 17898085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 20712809 - 20712749
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaa 332  Q
    ||||| |||||| |||| ||||||| || |||||| |||||||| ||||||||||| ||||    
T  20712809 tgtatccaaacacaaataactttaccttcaactcatttttagtcggaatcaattcactcaa 20712749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 48550242 - 48550290
Alignment:
Q  278 caaacataaatcactttacatttaactcacttttagtccgaatcaattc 326  Q
    ||||||||||||| ||||||| ||||||||||||| ||  |||||||||    
T  48550242 caaacataaatcaatttacatctaactcacttttaatcaaaatcaattc 48550290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 16972059 - 16972005
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattc 326  Q
    |||||||||||| |||||| ||||| || ||||||||||||||| ||||||||||    
T  16972059 tgtattcaaacacaaatcattttaccttcaactcacttttagtctgaatcaattc 16972005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 19649229 - 19649268
Alignment:
Q  273 gtattcaaacataaatcactttacatttaactcactttta 312  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  19649229 gtatccaaacataaatcactttacattcaactcactttta 19649268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 38875250 - 38875211
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcactttt 311  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  38875250 tgtatccaaacataaatcactttacattgaactcactttt 38875211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 239
Target Start/End: Original strand, 11038125 - 11038155
Alignment:
Q  209 ataattgattttgacatgtttggatgttctc 239  Q
    |||||||||||||||||||||||||||||||    
T  11038125 ataattgattttgacatgtttggatgttctc 11038155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 239
Target Start/End: Complemental strand, 13929849 - 13929819
Alignment:
Q  209 ataattgattttgacatgtttggatgttctc 239  Q
    |||||||||||||||||||||||||||||||    
T  13929849 ataattgattttgacatgtttggatgttctc 13929819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 36779439 - 36779487
Alignment:
Q  278 caaacataaatcactttacatttaactcacttttagtccgaatcaattc 326  Q
    ||||||||||| |||||||||| |||||||||||| ||  |||||||||    
T  36779439 caaacataaattactttacattcaactcacttttaatcaaaatcaattc 36779487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 34911039 - 34911095
Alignment:
Q  278 caaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    |||||||||||||||| || || ||||||||||||||| ||||||||||| |||||||    
T  34911039 caaacataaatcactt-accttcaactcacttttagtcggaatcaattcactcaaaat 34911095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 28466985 - 28466916
Alignment:
Q  266 tgtaactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    ||||| ||||| |||||||||| |||| ||| || |||||| |||||| | ||||||||||| |||||||    
T  28466985 tgtaaatgtatccaaacataaaccactataccttcaactcaattttagccagaatcaattcactcaaaat 28466916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 335
Target Start/End: Original strand, 34736748 - 34736817
Alignment:
Q  266 tgtaactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    ||||| ||||| |||||||||| |||| ||| || |||||| |||||| | ||||||||||| |||||||    
T  34736748 tgtaaatgtatccaaacataaaccactataccttcaactcaattttagccagaatcaattcactcaaaat 34736817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 19261023 - 19260995
Alignment:
Q  211 aattgattttgacatgtttggatgttctc 239  Q
    |||||||||||||||||||||||||||||    
T  19261023 aattgattttgacatgtttggatgttctc 19260995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 29409321 - 29409257
Alignment:
Q  269 aactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaa 333  Q
    |||||||| ||||||||||||| || ||||  |||||||||||| ||  ||||||||| ||||||    
T  29409321 aactgtatccaaacataaatcaattcacatcaaactcacttttaatcaaaatcaattctttcaaa 29409257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 335
Target Start/End: Original strand, 34620963 - 34621039
Alignment:
Q  259 acttttatgtaactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    |||||||  ||| ||||| ||||||||||||||||||| || |||||| || ||| | ||||| ||||| |||||||    
T  34620963 acttttacataaatgtatccaaacataaatcactttaccttcaactcaattctagccagaatccattcactcaaaat 34621039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 335
Target Start/End: Original strand, 34748400 - 34748476
Alignment:
Q  259 acttttatgtaactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    |||||||  ||| ||||| ||||||||||||||||||| || |||||| || ||| | ||||| ||||| |||||||    
T  34748400 acttttacataaatgtatccaaacataaatcactttaccttcaactcaattctagccagaatccattcactcaaaat 34748476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 3776612 - 3776669
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcatt 329  Q
    ||||| ||| |||||||||||||||||| |||||| |||||| | |||||||||||||    
T  3776612 tgtatccaagcataaatcactttacattcaactcaattttagccagaatcaattcatt 3776669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 37335029 - 37334976
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 325  Q
    |||||||| |||||||||||||||| || |||||| |||||||| |||||||||    
T  37335029 tgtattcagacataaatcactttaccttcaactcaattttagtcggaatcaatt 37334976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 7012675 - 7012714
Alignment:
Q  273 gtattcaaacataaatcactttacatttaactcactttta 312  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  7012675 gtatccaaacataaatcactttacattcaactcactttta 7012714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 335
Target Start/End: Original strand, 31084241 - 31084304
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    ||||| ||||||||||||| || ||||| |||||||||||| ||  ||||||||| ||||||||    
T  31084241 tgtatccaaacataaatcaattcacattcaactcacttttaatcaaaatcaattctttcaaaat 31084304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 310
Target Start/End: Complemental strand, 35132262 - 35132231
Alignment:
Q  279 aaacataaatcactttacatttaactcacttt 310  Q
    ||||||||||||||||||||||||||||||||    
T  35132262 aaacataaatcactttacatttaactcacttt 35132231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 44225600 - 44225639
Alignment:
Q  273 gtattcaaacataaatcactttacatttaactcactttta 312  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  44225600 gtatccaaacataaatcactttacattaaactcactttta 44225639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 10852774 - 10852740
Alignment:
Q  278 caaacataaatcactttacatttaactcactttta 312  Q
    |||||||||||||||||||||| ||||||||||||    
T  10852774 caaacataaatcactttacattcaactcactttta 10852740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 23918882 - 23918916
Alignment:
Q  278 caaacataaatcactttacatttaactcactttta 312  Q
    |||||||||||||||||||||| ||||||||||||    
T  23918882 caaacataaatcactttacattcaactcactttta 23918916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 325
Target Start/End: Original strand, 24916581 - 24916627
Alignment:
Q  279 aaacataaatcactttacatttaactcacttttagtccgaatcaatt 325  Q
    |||||||||||| |||||||| ||||||||||||| | |||||||||    
T  24916581 aaacataaatcattttacattcaactcacttttagcctgaatcaatt 24916627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 42644302 - 42644336
Alignment:
Q  278 caaacataaatcactttacatttaactcactttta 312  Q
    |||||||||||||||||||||| ||||||||||||    
T  42644302 caaacataaatcactttacattcaactcactttta 42644336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 29252186 - 29252129
Alignment:
Q  278 caaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    ||||||||||||| |||||| |||||||||||||  ||  |||||||||| |||||||    
T  29252186 caaacataaatcaatttacaattaactcacttttgatcaaaatcaattcaatcaaaat 29252129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 35951128 - 35951180
Alignment:
Q  279 aaacataaatcactttacatttaactcacttttagtccgaatcaattcattca 331  Q
    ||||||||||| ||||||||| || |||  ||||||| |||||||||||||||    
T  35951128 aaacataaatccctttacattcaattcaactttagtcggaatcaattcattca 35951180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 4119422 - 4119381
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcacttttag 313  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  4119422 tgtattcaaacataaatcactttacattagactcacttttag 4119381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 10918652 - 10918709
Alignment:
Q  278 caaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    |||||||||||||||||||||| ||||||||||||  |  |||||||||| |||||||    
T  10918652 caaacataaatcactttacattcaactcacttttatccaaaatcaattcagtcaaaat 10918709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 15220856 - 15220804
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaat 324  Q
    ||||| |||||||||||||||||||||| ||||||||||| |||  |||||||    
T  15220856 tgtatccaaacataaatcactttacattcaactcacttttcgtcataatcaat 15220804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 335
Target Start/End: Original strand, 3853943 - 3854006
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    ||||| ||||||||||||| |||||||| |||||||||||| ||  |||||||||  |||||||    
T  3853943 tgtatccaaacataaatcaatttacattcaactcacttttaatcaaaatcaattctatcaaaat 3854006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Complemental strand, 23359994 - 23359955
Alignment:
Q  273 gtattcaaacataaatcactttacatttaactcactttta 312  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  23359994 gtatccaaacataaatcactttacattcaactcactttta 23359955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 309
Target Start/End: Original strand, 44439350 - 44439381
Alignment:
Q  278 caaacataaatcactttacatttaactcactt 309  Q
    ||||||||||||||||||||||||||||||||    
T  44439350 caaacataaatcactttacatttaactcactt 44439381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 30503303 - 30503360
Alignment:
Q  278 caaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    |||||| |||||| ||||| || |||| |||||||||| ||||||||||| |||||||    
T  30503303 caaacaaaaatcagtttaccttcaactaacttttagtcagaatcaattcactcaaaat 30503360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 42973014 - 42973051
Alignment:
Q  267 gtaactgtattcaaacataaatcactttacatttaact 304  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  42973014 gtaaatgtattcaaacataaattactttacatttaact 42973051  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 4908880 - 4908920
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcactttta 312  Q
    ||||| |||||||||||||||||||||  ||||||||||||    
T  4908880 tgtatccaaacataaatcactttacatgaaactcactttta 4908920  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 22882875 - 22882931
Alignment:
Q  279 aaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 335  Q
    ||||||||||||||| |||||||||| | |||||  | ||||||||| |||||||||    
T  22882875 aaacataaatcacttaacatttaacttatttttatcctgaatcaatttattcaaaat 22882931  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 33502324 - 33502368
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcacttttagtcc 316  Q
    ||||| |||||| ||||||||||||||| |||| |||||||||||    
T  33502324 tgtatccaaacacaaatcactttacattcaacttacttttagtcc 33502368  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 38600508 - 38600468
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcactttta 312  Q
    ||||||||||||||||||| |||||||  ||||||||||||    
T  38600508 tgtattcaaacataaatcaatttacatcaaactcactttta 38600468  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 27374288 - 27374236
Alignment:
Q  273 gtattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 325  Q
    |||||||| || |||||||||||| ||||||| |||||||||| |||||||||    
T  27374288 gtattcaatcacaaatcactttacttttaacttacttttagtcggaatcaatt 27374236  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 22811075 - 22811114
Alignment:
Q  273 gtattcaaacataaatcactttacatttaactcactttta 312  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  22811075 gtatccaaacataaatcactttacattcaactcactttta 22811114  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 329
Target Start/End: Original strand, 39514933 - 39514976
Alignment:
Q  286 aatcactttacatttaactcacttttagtccgaatcaattcatt 329  Q
    ||||||||||||||||||||| |||||| | |||||||||||||    
T  39514933 aatcactttacatttaactcaattttagccagaatcaattcatt 39514976  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 239
Target Start/End: Complemental strand, 12208985 - 12208955
Alignment:
Q  209 ataattgattttgacatgtttggatgttctc 239  Q
    |||||||||||||||||||||||||||||||    
T  12208985 ataattgattttgacatgtttggatgttctc 12208955  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 34454082 - 34454048
Alignment:
Q  301 aactcacttttagtccgaatcaattcattcaaaat 335  Q
    ||||||||||||||| |||||||||||||||||||    
T  34454082 aactcacttttagtcagaatcaattcattcaaaat 34454048  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 24036623 - 24036660
Alignment:
Q  274 tattcaaacataaatcactttacatttaactcactttt 311  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  24036623 tattcaaacataaatcattttacattcaactcactttt 24036660  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 43438656 - 43438619
Alignment:
Q  275 attcaaacataaatcactttacatttaactcactttta 312  Q
    ||||||||||| || |||||||||||||||||||||||    
T  43438656 attcaaacatagataactttacatttaactcactttta 43438619  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 7667751 - 7667783
Alignment:
Q  277 tcaaacataaatcactttacatttaactcactt 309  Q
    ||||||||||||||||||||||| |||||||||    
T  7667751 tcaaacataaatcactttacattcaactcactt 7667783  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 13224760 - 13224732
Alignment:
Q  209 ataattgattttgacatgtttggatgttc 237  Q
    |||||||||||||||||||||||||||||    
T  13224760 ataattgattttgacatgtttggatgttc 13224732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 14299416 - 14299456
Alignment:
Q  272 tgtattcaaacataaatcactttacatttaactcactttta 312  Q
    |||||||||||| |||||||||||| || ||||||||||||    
T  14299416 tgtattcaaacacaaatcactttaccttcaactcactttta 14299456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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