View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16722_low_10 (Length: 496)
Name: NF16722_low_10
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16722_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 4337886 - 4338364
Alignment:
| Q |
1 |
gcatgtccccaaaattattctctccatcaacaaaaaccctttttcccattcatacaaacaaatcaatcaccatcaccaataacagcaacagaacaaagct |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4337886 |
gcatgtccccaaaactattctctccatcaacaaaaaccctttttcccattcatacaaacaaatcaatcaccatcaccaacaacagcaacagaacaaagct |
4337985 |
T |
|
| Q |
101 |
atcgttgctctgtttaagttcaagaaacggaacagagtgtcctgttccgttagaacagcagcccataaacgagtaccagtcgttatcgacctcgttcccg |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4337986 |
atcgttgctctatttaagttcaagaaacggaacagagtgtcctgttccgttagaacagcagcccataaacgagtaccagtcgttatcgacctcgttcccg |
4338085 |
T |
|
| Q |
201 |
ttttcatgggctgctggtgatgttgttgaatatggttcccggcttttcgtggtgggcttttcctttgccttgcttgtgggtttacctgtggcttggtttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4338086 |
ttttcatgggctgctggtgatgttgttgaatatggttcccggcttttcgtggtgggcttttcctttgccttgcttgtggggttacctgtggcttggtttg |
4338185 |
T |
|
| Q |
301 |
gaactgttggggcacaatctgagcctgctaagaggattgtttgtgctgcttctagtggtgttctggctgttacttttgcggttgttaggatgtatcttgg |
400 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4338186 |
gaactgttggggcacaatatgagcctgctaagaggattgtttgtgctgcttctagtggtgttctggctgttacttttgcggttgttaggatgtatcttgg |
4338285 |
T |
|
| Q |
401 |
ttgggcttatgttgggaatcgtttgctcagtgctactgttgaatgtaatgtgtattttctctctactttttaatcttat |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4338286 |
ttgggcttatgttgggaatcgtttgctcagtgctactgttgaatgtaatgtgtattttctctctactttttaatcttat |
4338364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 4321695 - 4321744
Alignment:
| Q |
119 |
ttcaagaaacggaacagagtgtcctgttccgttagaacagcagcccataa |
168 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
4321695 |
ttcaagaaacggagcagtgtgtcctgttccgcaagaacagcaacccataa |
4321744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University