View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16722_low_11 (Length: 456)
Name: NF16722_low_11
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16722_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 427
Target Start/End: Complemental strand, 182571 - 182161
Alignment:
| Q |
13 |
tcactttcttcaactcttgaacaaatgtactctcaatctcatcat---tctttcttatcaatggtgttgtcacctccttactcatctctctagagttgtt |
109 |
Q |
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| T |
182571 |
tcactttcttcaactcttgaacaaatgtactctcaatctcatgatcactctttcttatcaatggtgttgtcacctccttactcatctctctagagttgtt |
182472 |
T |
|
| Q |
110 |
tttcattaaatgtgatcactatgaatatgatatcagagatttatatataggagtgaaagagttttttctttcttcttctacctatatggaaagtaagtgt |
209 |
Q |
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| T |
182471 |
tttcattaaatgtgatcactatgaatatgatatcagagatttatatataggagtgaaagagttgtttctttcttcttctacctatatggaaagtaagtgt |
182372 |
T |
|
| Q |
210 |
ggttaatgttaatatttatggtcaaaaaccaagttgcatattatattaataataataaatttaaaattgtgcttctgcacacagaatgagaatgacagaa |
309 |
Q |
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| T |
182371 |
ggttaatgttaatatttatggtcaaaaaccaagttgcatat--------taataataaatttaaaattgtgcttctgcacacagaatgaggatgacagaa |
182280 |
T |
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| Q |
310 |
ttgaagagtgtgttgtttgttagttagttgtaatattcaattaatcacgtaccattaaatcattgttctcgacatcaatcata-tttgtacacttcatat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||| |
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| T |
182279 |
ttgaagagtgtgttgtttgttagttagttgtaatattcaattaatcacgtaccattaaatcattgttgtcgacatcaatgatattttgtacacttcatat |
182180 |
T |
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| Q |
409 |
ttttcaatattcaatcaac |
427 |
Q |
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||||||||||||||||||| |
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| T |
182179 |
ttttcaatattcaatcaac |
182161 |
T |
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