View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16722_low_12 (Length: 438)

Name: NF16722_low_12
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16722_low_12
NF16722_low_12
[»] chr7 (2 HSPs)
chr7 (2-401)||(25272029-25272428)
chr7 (324-361)||(41739719-41739756)
[»] chr2 (3 HSPs)
chr2 (228-361)||(4753528-4753662)
chr2 (300-353)||(36669090-36669143)
chr2 (300-353)||(31622040-31622093)
[»] chr6 (4 HSPs)
chr6 (227-363)||(18191745-18191882)
chr6 (228-401)||(21396297-21396467)
chr6 (250-361)||(31855674-31855785)
chr6 (294-361)||(30758799-30758866)
[»] chr3 (2 HSPs)
chr3 (284-361)||(36163440-36163517)
chr3 (287-353)||(20884286-20884352)
[»] chr8 (2 HSPs)
chr8 (249-353)||(32565569-32565673)
chr8 (303-362)||(17864641-17864700)
[»] chr5 (3 HSPs)
chr5 (281-353)||(16306748-16306820)
chr5 (318-361)||(35968623-35968666)
chr5 (227-361)||(38921454-38921589)
[»] chr4 (5 HSPs)
chr4 (279-361)||(52190296-52190378)
chr4 (226-361)||(53226679-53226814)
chr4 (281-353)||(52189240-52189312)
chr4 (324-361)||(30830024-30830061)
chr4 (324-361)||(31409407-31409444)
[»] chr1 (4 HSPs)
chr1 (300-353)||(26529581-26529634)
chr1 (300-353)||(36574035-36574088)
chr1 (281-363)||(49917442-49917524)
chr1 (324-361)||(35063549-35063586)


Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 2 - 401
Target Start/End: Complemental strand, 25272428 - 25272029
Alignment:
Q  2 acacacgtttcctcgaataaatccttgtagttgcttgcagttgcacattaataagggtgacaacacttactaacgttcaattttgtgataaaattatcat 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25272428 acacacgtttcctcgaataaatccatgtagttgcttgcagttgcacattaataagggtgacaacacttactaacgttcaattttgtgataaaattatcat 25272329  T
Q  102 ttatattgtgatttgattataannnnnnnggtagaaaatattgggtgaaaggactgtgctccgaatctaatctaatgtacataataccttagagtttaaa 201  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25272328 ttatattgtgatttgattataatttttttggtagaaaatattgggtgaaaggacggtgctccgaatctaatctaatgtacataataccttagagtttaaa 25272229  T
Q  202 gagcactcacaagtgagtttccgtttgagtaaacccttatttgggttctgaaagtgtcagtcactatcagactatttcatggatcaatttaatgaataaa 301  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25272228 gagcactcacaagtgagtttccgtttgagtaaatccttatttgggtcctgaaagtgtcagtcactatcagactattttatggatcaatttaatgaataaa 25272129  T
Q  302 aaactccctcgatgtatgttatgttagtcaaatgcattcaaaacgttaacttagtgttaatgtttatgttacacttgccactacagttgcattgtttgcc 401  Q
    ||| |||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25272128 aaattccctcaatgtatgtaaagttagtcaaatgcattcaaaacgttaacttagtgttaatgtttatgttacacttgccactacagttgcattgtttgcc 25272029  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 41739719 - 41739756
Alignment:
Q  324 gttagtcaaatgcattcaaaacgttaacttagtgttaa 361  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  41739719 gttagtcaaatgcatccaaaacgttaacttggtgttaa 41739756  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 228 - 361
Target Start/End: Original strand, 4753528 - 4753662
Alignment:
Q  228 gagtaaacccttatttgggttc-tgaaagtgtcagtcactatcagactatttcatggatcaatttaatgaataaaaaactccctcgatgtatgttatgtt 326  Q
    |||||||||||  ||||||| | ||||||||||  || ||||||||| | | | |||||||||| ||||||| |||||||||||| ||||||||| ||||    
T  4753528 gagtaaaccctcgtttgggtccctgaaagtgtctctcgctatcagaccagtccctggatcaattaaatgaatcaaaaactccctcaatgtatgttttgtt 4753627  T
Q  327 agtcaaatgcattcaaaacgttaacttagtgttaa 361  Q
    |||||||||||| |||||||||||||| |||||||    
T  4753628 agtcaaatgcatccaaaacgttaacttggtgttaa 4753662  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 36669143 - 36669090
Alignment:
Q  300 aaaaactccctcgatgtatgttatgttagtcaaatgcattcaaaacgttaactt 353  Q
    |||||||||||| |||| |||| |||||||||||||||| ||||||||||||||    
T  36669143 aaaaactccctcaatgtctgttctgttagtcaaatgcatccaaaacgttaactt 36669090  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 31622093 - 31622040
Alignment:
Q  300 aaaaactccctcgatgtatgttatgttagtcaaatgcattcaaaacgttaactt 353  Q
    |||||||||||| |||| ||||  ||| ||||||||||| ||||||||||||||    
T  31622093 aaaaactccctcaatgtttgttccgtttgtcaaatgcatccaaaacgttaactt 31622040  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 227 - 363
Target Start/End: Original strand, 18191745 - 18191882
Alignment:
Q  227 tgagtaaacccttatttgggttc-tgaaagtgtcagtcactatcagactatttcatggatcaatttaatgaataaaaaactccctcgatgtatgttatgt 325  Q
    |||||||||||| |||||||| | ||||||||||   | ||||||||| | | | |  ||||||||||||||| |||||||||| | |||||||||||||    
T  18191745 tgagtaaaccctcatttgggtccctgaaagtgtcccacgctatcagaccagtccctcaatcaatttaatgaatcaaaaactcccccaatgtatgttatgt 18191844  T
Q  326 tagtcaaatgcattcaaaacgttaacttagtgttaatg 363  Q
    ||||||||||||| |||||||||||||| || ||||||    
T  18191845 tagtcaaatgcatccaaaacgttaacttggtattaatg 18191882  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 228 - 401
Target Start/End: Original strand, 21396297 - 21396467
Alignment:
Q  228 gagtaaacccttatttgggttc-tgaaagtgtcagtcactatcagactatttcatggatcaatttaatgaataaaaaactccctcgatgtatgttatgtt 326  Q
    |||||||||| | ||||||| | ||||||||||| || ||||||||||    | || |||||||||||||||||||||||||  | ||||||||| | ||    
T  21396297 gagtaaacccctgtttgggtccatgaaagtgtcactcgctatcagactg---cctgtatcaatttaatgaataaaaaactcctccaatgtatgttctttt 21396393  T
Q  327 agtcaaatgcattcaaaacgttaacttagtgttaatgtttatgttacacttgccactacagttgcattgtttgcc 401  Q
    |||||||| ||| ||||||| |||||| ||||||| |  |  ||||||||||||||| ||| | |||||||||||    
T  21396394 agtcaaatacatccaaaacgctaacttggtgttaacg-gtccgttacacttgccactgcagctacattgtttgcc 21396467  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 361
Target Start/End: Original strand, 31855674 - 31855785
Alignment:
Q  250 tgaaagtgtcagtcactatcagactatttcatggatcaatttaatgaataaaaaactccctcgatgtatgttatgttagtcaaatgcattcaaaacgtta 349  Q
    ||||||||||  || ||||||||| | ||| || ||||||||||||||| ||||||||||   ||||||||||||||||||||||| || |||||| |||    
T  31855674 tgaaagtgtctctcgctatcagaccagttcctgaatcaatttaatgaatcaaaaactcccctaatgtatgttatgttagtcaaatgtatccaaaacatta 31855773  T
Q  350 acttagtgttaa 361  Q
    | || |||||||    
T  31855774 atttggtgttaa 31855785  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 30758866 - 30758799
Alignment:
Q  294 tgaataaaaaactccctcgatgtatgttatgttagtcaaatgcattcaaaacgttaacttagtgttaa 361  Q
    ||||| |||||||||||| ||||||||| |||||||||||||||| |||||| ||||||| |||||||    
T  30758866 tgaatcaaaaactccctcaatgtatgttttgttagtcaaatgcatccaaaacattaacttggtgttaa 30758799  T

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Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 36163440 - 36163517
Alignment:
Q  284 atcaatttaatgaataaaaaactccctcgatgtatgttatgttagtcaaatgcattcaaaacgttaacttagtgttaa 361  Q
    ||||||||||||||| |||||||||| | ||||| |||||||||||||||||||| |||||||||||||| |||||||    
T  36163440 atcaatttaatgaatcaaaaactcccccaatgtacgttatgttagtcaaatgcatccaaaacgttaacttggtgttaa 36163517  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 20884286 - 20884352
Alignment:
Q  287 aatttaatgaataaaaaactccctcgatgtatgttatgttagtcaaatgcattcaaaacgttaactt 353  Q
    |||||||||||| |||||||||  | ||  ||||| | |||||||||||||| ||||||||||||||    
T  20884286 aatttaatgaatcaaaaactcctccaatacatgttctcttagtcaaatgcatccaaaacgttaactt 20884352  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 353
Target Start/End: Complemental strand, 32565673 - 32565569
Alignment:
Q  249 ctgaaagtgtcagtcactatcagactatttcatggatcaatttaatgaataaaaaactccctcgatgtatgttatgttagtcaaatgcattcaaaacgtt 348  Q
    |||||||||||  || ||||||||| | | | | |||||||||||||||| |||||||||| | ||||| |||||||||||||||||||| |||||||||    
T  32565673 ctgaaagtgtccctcgctatcagaccagtccctcgatcaatttaatgaatcaaaaactcccccaatgtacgttatgttagtcaaatgcatccaaaacgtt 32565574  T
Q  349 aactt 353  Q
    |||||    
T  32565573 aactt 32565569  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 362
Target Start/End: Complemental strand, 17864700 - 17864641
Alignment:
Q  303 aactccctcgatgtatgttatgttagtcaaatgcattcaaaacgttaacttagtgttaat 362  Q
    ||||||||| |||| | || |||||||||||||||| |||||| ||||||| ||||||||    
T  17864700 aactccctcaatgtctattttgttagtcaaatgcatccaaaacattaacttggtgttaat 17864641  T

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Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 281 - 353
Target Start/End: Complemental strand, 16306820 - 16306748
Alignment:
Q  281 tggatcaatttaatgaataaaaaactccctcgatgtatgttatgttagtcaaatgcattcaaaacgttaactt 353  Q
    |||||||||||||||||| ||||||| |||  ||||||||||||||||||||||||||  |||||||||||||    
T  16306820 tggatcaatttaatgaatcaaaaacttccttaatgtatgttatgttagtcaaatgcatctaaaacgttaactt 16306748  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 35968666 - 35968623
Alignment:
Q  318 tgttatgttagtcaaatgcattcaaaacgttaacttagtgttaa 361  Q
    |||| |||||||||||||||| |||||||||||||| |||||||    
T  35968666 tgttttgttagtcaaatgcatccaaaacgttaacttggtgttaa 35968623  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 361
Target Start/End: Original strand, 38921454 - 38921589
Alignment:
Q  227 tgagtaaacccttatttgggttc-tgaaagtgtcagtcactatcagactatttcatggatcaatttaatgaataaaaaactccctcgatgtatgttatgt 325  Q
    |||||||||||| |||||||| | |||||||||   |||||||||| |   | | | |||||||  ||||||  |||||||||| | |||  ||||  ||    
T  38921454 tgagtaaaccctcatttgggtccctgaaagtgttgctcactatcaggcacatccctagatcaatgaaatgaaccaaaaactcccccaatgattgtttcgt 38921553  T
Q  326 tagtcaaatgcattcaaaacgttaacttagtgttaa 361  Q
    ||||||||||||| |||||||||||||| |||||||    
T  38921554 tagtcaaatgcatccaaaacgttaacttggtgttaa 38921589  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 361
Target Start/End: Complemental strand, 52190378 - 52190296
Alignment:
Q  279 catggatcaatttaatgaataaaaaactccctcgatgtatgttatgttagtcaaatgcattcaaaacgttaacttagtgttaa 361  Q
    |||||||||||| || |||  |||||||||| | |||| |||| |||||||||||||||| |||||||||||||| |||||||    
T  52190378 catggatcaattaaacgaaccaaaaactcccccaatgtctgttttgttagtcaaatgcatccaaaacgttaacttggtgttaa 52190296  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 361
Target Start/End: Original strand, 53226679 - 53226814
Alignment:
Q  226 ttgagtaaacccttatttgggttctgaaagtgtcagtcactatcagactatttcatggatcaatttaatgaataaaaaactccctcgatgtatgttatgt 325  Q
    ||||||||||| | |||||||| ||  |||||||| ||||||||||| |  |   || |||| |||||||||| |||||||||  | ||||||||| |      
T  53226679 ttgagtaaaccttcatttgggtccttgaagtgtcactcactatcagattggtctctgaatcagtttaatgaatcaaaaactcctccaatgtatgttctaa 53226778  T
Q  326 tagtcaaatgcattcaaaacgttaacttagtgttaa 361  Q
    |||||||||||||   ||||||||||||||||||||    
T  53226779 tagtcaaatgcatctgaaacgttaacttagtgttaa 53226814  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 52189240 - 52189312
Alignment:
Q  281 tggatcaatttaatgaataaaaaactccctcgatgtatgttatgttagtcaaatgcattcaaaacgttaactt 353  Q
    |||||||||| ||  ||| |||||||| ||| |||||||||  ||||||||||||||| ||||||||||||||    
T  52189240 tggatcaattaaacaaatcaaaaactcgctcaatgtatgttccgttagtcaaatgcatccaaaacgttaactt 52189312  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 30830024 - 30830061
Alignment:
Q  324 gttagtcaaatgcattcaaaacgttaacttagtgttaa 361  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  30830024 gttagtcaaatgcatccaaaacgttaacttggtgttaa 30830061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 31409407 - 31409444
Alignment:
Q  324 gttagtcaaatgcattcaaaacgttaacttagtgttaa 361  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  31409407 gttagtcaaatgcatccaaaacgttaacttggtgttaa 31409444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 26529581 - 26529634
Alignment:
Q  300 aaaaactccctcgatgtatgttatgttagtcaaatgcattcaaaacgttaactt 353  Q
    |||||||||||| |||| |||| |||||||||||||||| ||||||||||||||    
T  26529581 aaaaactccctcaatgtttgttctgttagtcaaatgcatccaaaacgttaactt 26529634  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 36574035 - 36574088
Alignment:
Q  300 aaaaactccctcgatgtatgttatgttagtcaaatgcattcaaaacgttaactt 353  Q
    |||||||||||| |||| ||||  ||||||||||||||| ||||||||||||||    
T  36574035 aaaaactccctcaatgtctgttccgttagtcaaatgcatccaaaacgttaactt 36574088  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 363
Target Start/End: Original strand, 49917442 - 49917524
Alignment:
Q  281 tggatcaatttaatgaataaaaaactccctcgatgtatgttatgttagtcaaatgcattcaaaacgttaacttagtgttaatg 363  Q
    |||||||||||||||||  ||||||||||    ||| || | |||||||||||||||| ||||| ||||||||  ||||||||    
T  49917442 tggatcaatttaatgaactaaaaactcccgtattgtttgatctgttagtcaaatgcatccaaaatgttaacttgatgttaatg 49917524  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 35063586 - 35063549
Alignment:
Q  324 gttagtcaaatgcattcaaaacgttaacttagtgttaa 361  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  35063586 gttagtcaaatgcatccaaaacgttaacttggtgttaa 35063549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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