View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16722_low_13 (Length: 430)
Name: NF16722_low_13
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16722_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 27940065 - 27939653
Alignment:
| Q |
18 |
gtacgtaatgtgcattttgtttctatgacttttacttgcatagatgctaaaatatgaaggtcgatatgagcagattctggacagggcggccacactatct |
117 |
Q |
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| T |
27940065 |
gtacgtaatgtgcattttgtttctgtgacttttacttgcatagatgctaaaatatgaaggtcgatatgagcagattctggacagggcggccacactatct |
27939966 |
T |
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| Q |
118 |
atgtacattgattggcaattaagaagaaattagattgccaatgtagttttcaagtgtcttttgggttttgtttcctgctgttttcatttagttattttgg |
217 |
Q |
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| T |
27939965 |
atgtacattgattggcaattaagaagaaattagattgccaatgtagttttcaagtgtcttttgggttttgtttcctgctgttttcatttagttattttgg |
27939866 |
T |
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| Q |
218 |
ccttcttggggatctttttggtttgatgttttagattttggcaattatcaatgtagtgaagcatcaatttttgttattagctatatagaatattatttta |
317 |
Q |
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| T |
27939865 |
ccttcttggggatctttttggcttgatgttttagattttggcaattatcaatgtagtgaagcatcaatttttgttattagctatatagaatattatttta |
27939766 |
T |
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| Q |
318 |
agcatccagtattggtgatcacatgatgcttaagttaaattcgttatcaatgaatttaagttataagtcaattgtttactttgtttagagatcgaatatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27939765 |
agcatccagtattggtgatcacatgatgcttaagttaaattcgttatcaatgaatttaagttataagtcaattgtttactttgtttagagatcgaatatt |
27939666 |
T |
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| Q |
418 |
gtctaaattgcct |
430 |
Q |
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| T |
27939665 |
gtctaaattgcct |
27939653 |
T |
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