View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16722_low_16 (Length: 321)

Name: NF16722_low_16
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16722_low_16
NF16722_low_16
[»] chr5 (2 HSPs)
chr5 (4-303)||(33562354-33562653)
chr5 (104-207)||(17060811-17060914)
[»] chr2 (20 HSPs)
chr2 (4-299)||(39196327-39196627)
chr2 (4-290)||(39223776-39224056)
chr2 (11-282)||(39387328-39387604)
chr2 (4-299)||(39205546-39205859)
chr2 (4-252)||(39371182-39371430)
chr2 (10-221)||(39472664-39472875)
chr2 (4-219)||(39216722-39216937)
chr2 (11-209)||(39396564-39396762)
chr2 (11-219)||(39153131-39153339)
chr2 (4-209)||(39412943-39413146)
chr2 (4-207)||(39380408-39380611)
chr2 (10-207)||(39421100-39421294)
chr2 (18-191)||(44895037-44895210)
chr2 (53-219)||(39099701-39099867)
chr2 (16-193)||(39138723-39138897)
chr2 (11-209)||(39478207-39478404)
chr2 (179-241)||(39452264-39452326)
chr2 (15-146)||(44624858-44624989)
chr2 (101-191)||(39503972-39504062)
chr2 (101-219)||(39604478-39604596)
[»] chr7 (1 HSPs)
chr7 (4-193)||(19808968-19809154)
[»] chr8 (1 HSPs)
chr8 (4-154)||(45343030-45343180)
[»] chr3 (1 HSPs)
chr3 (56-177)||(51576102-51576223)
[»] chr6 (1 HSPs)
chr6 (12-219)||(16114440-16114647)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 303
Target Start/End: Original strand, 33562354 - 33562653
Alignment:
Q  4 tagcatttgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattc 103  Q
    |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33562354 tagcatttgatttgaaagctaacatgaaagaaaatactgaattttttttggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattc 33562453  T
Q  104 ttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttct 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33562454 ttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttgaaagcctgggttttgcaaacagagtttct 33562553  T
Q  204 ggtatgataatttagataagctttagatattttatcatgattatcaaatgagtttgtgtctgttgttaatttccctaccattcctatctgcggtcatgag 303  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33562554 ggtatgttaatttagataagctttagatattttatcatgattatcaaatgagtttgtgtctgttgttaatttccctaccattcctatctgcggtcatgag 33562653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 17060811 - 17060914
Alignment:
Q  104 ttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttct 203  Q
    ||||||| |||||||||| ||||| |||||||||| |||||||  |||||| ||  | |||||||||||||  |  || ||||||||||| | ||| |||    
T  17060811 ttttgatcaagatgaagtcttggatctttttgcatctgttgctgagcacaagatatctgtggagctgtttgagaaactaggttttgcaaataaagtgtct 17060910  T
Q  204 ggta 207  Q
    ||||    
T  17060911 ggta 17060914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 299
Target Start/End: Complemental strand, 39196627 - 39196327
Alignment:
Q  4 tagcatttgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattc 103  Q
    |||||||||||||||||||||||||||| || ||||||||||       |||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  39196627 tagcatttgatttgaaagctaacatgaatgacaatactgaaaattctttggcggttcttggctttctgctgcttttgtcaatttataaattgcttgattc 39196528  T
Q  104 ttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39196527 ttttgatgaagatgaagttttggagctttttgcatttgttgctctgaacaatattgcggtggagctgtttggaagcctgggttttgcaaacagagtttct 39196428  T
Q  204 ggtatgataatttagataagctttagatattttatcatgatt-----atcaaatgagtttgtgtctgttgttaatttccctaccattcctatctgcggtc 298  Q
    ||||||||||||||||||||||||||||||||| ||| ||||     |||||||| ||||||||||| ||||| |||||||||||||||||| |||||||    
T  39196427 ggtatgataatttagataagctttagatattttttcaagattatcgaatcaaatgcgtttgtgtctgatgttactttccctaccattcctatttgcggtc 39196328  T
Q  299 a 299  Q
    |    
T  39196327 a 39196327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 4 - 290
Target Start/End: Original strand, 39223776 - 39224056
Alignment:
Q  4 tagcatttgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattc 103  Q
    |||||| |||||| ||||  ||||||||||| ||||||||||       ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39223776 tagcatatgatttaaaagaaaacatgaaagacaatactgaaaaatctttggcggttcttggttttctgctgcttttgtcaatttataaattgcttgattc 39223875  T
Q  104 ttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttct 203  Q
     |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  39223876 atttgatgaagatgaagttctggatctttttgcatttgttgctctgcacaaaattgctgtggagctgtttggatgcctgggttttgcaaacagagtttct 39223975  T
Q  204 ggtatgataatttagataagctttagatattttatcatgattatcaaa-----tgagtttgtgtctgttgttaatttccctaccattcctat 290  Q
    |||||| |||           ||||||||||||||||||| |||||||     |||||||||||||||||||| ||||||||||||||||||    
T  39223976 ggtatgttaa-----------tttagatattttatcatgactatcaaatcaattgagtttgtgtctgttgttactttccctaccattcctat 39224056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 39387604 - 39387328
Alignment:
Q  11 tgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgat 110  Q
    |||||| ||||||||||||||||||||||||||||       ||| ||||||||||||||| |||||||||||||||||    ||||||||| ||||||     
T  39387604 tgatttaaaagctaacatgaaagaaaatactgaaaattctttggccgttcttggttttctgctgcttttgtcaatttatgggctgcttgattattttgac 39387505  T
Q  111 gaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttctggtatga 210  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||     
T  39387504 gaagatgaagttttggagctttttgcatttgttgctatgcacgaaattgctgtggagctatttggaagtctgggttttgcaaacagagtttcaggtatgt 39387405  T
Q  211 taatttagataagctttagatattttatcatgatt-----atcaaatgagtttgtgtctgttgttaatttccctacc 282  Q
    |  ||||||||| ||| ||||||||||||||||||     |||||||||||| |||||| |||||| ||||||||||    
T  39387404 ttttttagataaacttcagatattttatcatgattatccaatcaaatgagttggtgtctattgttactttccctacc 39387328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 4 - 299
Target Start/End: Complemental strand, 39205859 - 39205546
Alignment:
Q  4 tagcatttgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattc 103  Q
    |||||||||| ||||||||||| |||||||||||||||||||       ||||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  39205859 tagcatttgacttgaaagctaagatgaaagaaaatactgaaaattctatggcggttcttggttttctactgcttttgtcgatttataaattgcttgattc 39205760  T
Q  104 ttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctggg---tttt----------gc 190  Q
    ||||||| ||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |||||||| |  |   ||||           |    
T  39205759 ttttgataaagatgaagttttcgagattttggcatttgttgctctgcacaaaattgccgtggagctgcttggaagctttagatattttatcatgattatc 39205660  T
Q  191 aaacagagtttctggtatgataatttagataagctttagatattttatcatgatt-----atcaaatgagtttgtgtctgttgttaatttccctaccatt 285  Q
    ||||||||||||||||||| |||||| |||| |||||||||||||||| ||||||     |||||||| ||||||||||||||| | ||||||| |||||    
T  39205659 aaacagagtttctggtatgttaattttgatacgctttagatattttatgatgattatcaaatcaaatgggtttgtgtctgttgtcactttccctgccatt 39205560  T
Q  286 cctatctgcggtca 299  Q
    ||||| ||| ||||    
T  39205559 cctatttgcagtca 39205546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 4 - 252
Target Start/End: Original strand, 39371182 - 39371430
Alignment:
Q  4 tagcatttgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattc 103  Q
    ||||| ||||| ||||||| |||||||||||||||| | |||       || |||||||||||||||  |||||||||||| ||||  |||| ||  |||    
T  39371182 tagcacttgatatgaaagccaacatgaaagaaaatagtaaaaatcctttggtggttcttggttttctattgcttttgtcaaattatggattggttacttc 39371281  T
Q  104 ttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttct 203  Q
    |||||||||||||||| ||||||||||||||||||||||||||  |||||| || ||  ||||||||||||||| | |||||||||| |||| || ||||    
T  39371282 ttttgatgaagatgaacttttggagctttttgcatttgttgctgagcacaagatagctatggagctgtttggaaccatgggttttgccaacaaagcttct 39371381  T
Q  204 ggtatgataatttagataagctttagatattttatcatgattatcaaat 252  Q
    |||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  39371382 ggtatgttaatgtagacatgctttagatattttatcatgattatcaaat 39371430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 39472875 - 39472664
Alignment:
Q  10 ttgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttga 109  Q
    |||||||||||| |||||||||||||||||||||||       ||  ||||||||||||||  ||||||||||||||||| ||||||||  |||||||||    
T  39472875 ttgatttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttga 39472776  T
Q  110 tgaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttctggtatg 209  Q
    |||||||||||| |||||||| || ||||||||||||| |||||| || || ||||| |||||| | | | ||||||||||||| | | |||| |||||     
T  39472775 tgaagatgaagtcttggagctcttcgcatttgttgctcagcacaagatagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggtatt 39472676  T
Q  210 ataatttagata 221  Q
     |||||||||||    
T  39472675 ttaatttagata 39472664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 39216722 - 39216937
Alignment:
Q  4 tagcatttgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattc 103  Q
    ||||||||||||||||| |||||||||  ||||||||| |||       || |||||| ||||||||  |||||||||||||||||  |||| ||  |||    
T  39216722 tagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaatttatggattggttacttc 39216821  T
Q  104 ttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttct 203  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| |||||| || ||  | || |||||||  | ||||||||||||||| | |||||||    
T  39216822 ttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttct 39216921  T
Q  204 ggtatgataatttaga 219  Q
    |||||| |||||||||    
T  39216922 ggtatgttaatttaga 39216937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 39396762 - 39396564
Alignment:
Q  11 tgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgat 110  Q
    |||||||| |||| |||| | ||||||||||||||       |||||||||||||||| || |||||||||||||||||  |||||||  |||||| |||    
T  39396762 tgatttgagagcttacattagagaaaatactgaaaattctttggcggttcttggttttttgttgcttttgtcaatttatggattgcttacttctttcgat 39396663  T
Q  111 gaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttctggtatg 209  Q
    ||||||||||||||||||||||||||||  ||||||| |||||| |  ||  ||||||||||||  | ||||||||||||||| | |||||||||||||    
T  39396662 gaagatgaagttttggagctttttgcatcggttgctcagcacaagacagctatggagctgtttgagaccctgggttttgcaaataaagtttctggtatg 39396564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 39153131 - 39153339
Alignment:
Q  11 tgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgat 110  Q
    ||||||||||||||| || ||||||||||||||||       || |||||||||||||||  || ||||||| ||||||  |||| ||  |||||| |||    
T  39153131 tgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgatttatggattggttacttctttcgat 39153230  T
Q  111 gaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttctggtatga 210  Q
     |||||||||| |||||||||||||||||||||||||  ||||| | ||| ||||| || ||| | | ||||||||||||||| | |||||||||||||     
T  39153231 aaagatgaagtcttggagctttttgcatttgttgctcaacacaagactgctgtggaactatttcggaccctgggttttgcaaataaagtttctggtatgt 39153330  T
Q  211 taatttaga 219  Q
    |||||||||    
T  39153331 taatttaga 39153339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 39413146 - 39412943
Alignment:
Q  4 tagcatttgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattc 103  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||       |||||||||| |||||||| ||||||||||| ||| |  |||| ||  ||     
T  39413146 tagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgttgcttttgtcagtttgtggattggttacttt 39413047  T
Q  104 ttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttct 203  Q
    ||| |||||||||||| | |||||||||||||||||||||||||  ||||| || || | | |||||||||||| ||||||||||||||  | |||||||    
T  39413046 tttggatgaagatgaaatcttggagctttttgcatttgttgctcaacacaagatagctgcgaagctgtttggaaccctgggttttgcaa--aaagtttct 39412949  T
Q  204 ggtatg 209  Q
    ||||||    
T  39412948 ggtatg 39412943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 39380611 - 39380408
Alignment:
Q  4 tagcatttgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattc 103  Q
    ||||| |||||||||||||| |||| | ||| |||||||||        |||||||||||| |||||  |||||||||||||||||  |||||||  |||    
T  39380611 tagcacttgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttgtcaatttatggattgcttacttc 39380512  T
Q  104 ttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttct 203  Q
    ||| |||||||||||| ||||||||||||||||||| ||||||| |||||| || ||  ||||| ||||| |   ||||||||||||||| | |||||||    
T  39380511 tttcgatgaagatgaaattttggagctttttgcattggttgctcagcacaagatagctatggagatgtttcgggccctgggttttgcaaatatagtttct 39380412  T
Q  204 ggta 207  Q
    ||||    
T  39380411 ggta 39380408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 39421294 - 39421100
Alignment:
Q  10 ttgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttga 109  Q
    |||||||||||||||| ||| |||||||||||||||       ||   |||| ||||||||  ||||||||||||||||  ||||| ||  || |||  |    
T  39421294 ttgatttgaaagctaatatggaagaaaatactgaaaataatttgg---ttctcggttttctactgcttttgtcaatttaccaattggttacttatttcaa 39421198  T
Q  110 tgaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttctggta 207  Q
    |||||||||||| ||||||||||||||||||||||||| |||||| || || || ||| ||||||  | ||||||||||||||| | |||||||||||    
T  39421197 tgaagatgaagtgttggagctttttgcatttgttgctcagcacaagatagcagttgagttgtttgagaccctgggttttgcaaataaagtttctggta 39421100  T

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Target: chr2; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 44895210 - 44895037
Alignment:
Q  18 aaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgatgaagatg 117  Q
    ||||||||||| |||| |||||||||||       || |||||||||||||||  |||||||||||||||||  |||| ||  |||||| |||||||  |    
T  44895210 aaagctaacataaaaggaaatactgaaaattctttggtggttcttggttttctactgcttttgtcaatttatggattgattacttctttcgatgaaggcg 44895111  T
Q  118 aagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgca 191  Q
    |||||||||||||||||||||||||||||| |||||| || || ||||| || ||| | | ||| |||||||||    
T  44895110 aagttttggagctttttgcatttgttgctcagcacaagatagctgtggaactttttcggaccctcggttttgca 44895037  T

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Target: chr2; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 39099701 - 39099867
Alignment:
Q  53 ggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgctctgcac 152  Q
    ||||||||||||||||||  | ||| |||||||||||||||||  |  ||||||||||||||||||||||||  |||||||||  |||| ||||| ||||    
T  39099701 ggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcac 39099800  T
Q  153 aaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttctggtatgataatttaga 219  Q
    || || || ||  |||| |||||||  |||||||||||  | | || |||||||||| || ||||||    
T  39099801 aagatagctgtaaagctctttggaattctgggttttgccgataaagcttctggtatgttagtttaga 39099867  T

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Target: chr2; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 39138723 - 39138897
Alignment:
Q  16 tgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgatgaaga 115  Q
    |||||||||||||||||   ||||||||||       || |||||| ||||||||  || |||||||| ||||| ||||||||  || ||||||||||||    
T  39138723 tgaaagctaacatgaaa---aatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttattttgatgaaga 39138819  T
Q  116 tgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaa 193  Q
    |||||| |||||||||||  |||||||||||| |||||| |  || ||||| ||||||   | |||||||||||||||    
T  39138820 tgaagtcttggagcttttcacatttgttgctcagcacaagacagctgtggaactgtttaagaccctgggttttgcaaa 39138897  T

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Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 39478404 - 39478207
Alignment:
Q  11 tgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgat 110  Q
    ||||||||||||| |||| | ||||||||||||||       ||| ||||||| ||||||  |||||||||||||||||  |||||||  |||||| ||     
T  39478404 tgatttgaaagcttacatcagagaaaatactgaaaattcttcggcagttcttgattttctactgcttttgtcaatttatggattgcttacttctttcgaa 39478305  T
Q  111 gaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttctggtatg 209  Q
    |||| ||||||||||||| ||||||||| ||||||||  ||||| |  ||  ||||| ||||||  | ||||||||| ||||| | ||||| |||||||    
T  39478304 gaaggtgaagttttggag-tttttgcatctgttgctcaacacaagacagctatggagttgtttgagaccctgggtttcgcaaataaagtttttggtatg 39478207  T

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Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 39452264 - 39452326
Alignment:
Q  179 cctgggttttgcaaacagagtttctggtatgataatttagataagctttagatattttatcat 241  Q
    ||||||||||||||| | | ||||||||||| ||||||||||| | |||||||||||||||||    
T  39452264 cctgggttttgcaaataaattttctggtatgttaatttagatatgatttagatattttatcat 39452326  T

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Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 44624858 - 44624989
Alignment:
Q  15 ttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgatgaag 114  Q
    |||||||||||||||||||||||||||||||       || |||||| || |||||  || ||||||| ||||||  ||||| |  || |||||||||||    
T  44624858 ttgaaagctaacatgaaagaaaatactgaaaattatttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaag 44624957  T
Q  115 atgaagttttggagctttttgcatttgttgct 146  Q
    ||||||| |   ||||||||| || |||||||    
T  44624958 atgaagtctaaaagctttttggatctgttgct 44624989  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 39504062 - 39503972
Alignment:
Q  101 ttcttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgca 191  Q
    |||||| |||||||||||||||||  |||||||||  |||| ||||| |||| | || || || |||||||||||||  || |||||||||    
T  39504062 ttctttcgatgaagatgaagttttcaagctttttggttttgctgctcagcacgagatagctgtagagctgtttggaactcttggttttgca 39503972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 39604478 - 39604596
Alignment:
Q  101 ttcttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtt 200  Q
    |||||| |||||||||||||||||  ||||||| |  |||| ||||| | |||| || || || |||||||||||||  |||||||||||  | | || |    
T  39604478 ttctttcgatgaagatgaagttttaaagcttttcgagtttgctgctcaggacaagatagctgtagagctgtttggaactctgggttttgccgataaagct 39604577  T
Q  201 tctggtatgataatttaga 219  Q
    ||||||||| || ||||||    
T  39604578 tctggtatgttagtttaga 39604596  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 193
Target Start/End: Original strand, 19808968 - 19809154
Alignment:
Q  4 tagcatttgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattc 103  Q
    ||||| |||||||||||||||||||||||   | ||||||||       || |||||||||||||||  ||||||||||| ||||| ||||||||  ||     
T  19808968 tagcacttgatttgaaagctaacatgaaa---agtactgaaaattctctggtggttcttggttttctactgcttttgtcagtttatgaattgcttactta 19809064  T
Q  104 ttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaa 193  Q
    |||||||||||||||||| ||||||||||| ||||||||||||| |||||| |  |||||||| ||||||   | |||||||||||||||    
T  19809065 ttttgatgaagatgaagtcttggagcttttcgcatttgttgctcagcacaagacagccgtggaactgtttcagaccctgggttttgcaaa 19809154  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 45343030 - 45343180
Alignment:
Q  4 tagcatttgatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattc 103  Q
    ||||| |||| |||||||||||| |||||| |||||||||||       |   ||||||||||||||  || ||||||||||| ||  |||||||  |||    
T  45343030 tagcacttgagttgaaagctaacgtgaaaggaaatactgaaaaatcattgaacgttcttggttttctactgattttgtcaattcatgtattgcttacttc 45343129  T
Q  104 ttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaa 154  Q
    ||||||| |||||||||| ||||||||||||| || ||||| || ||||||    
T  45343130 ttttgataaagatgaagtcttggagctttttgtatctgttgttcagcacaa 45343180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 51576102 - 51576223
Alignment:
Q  56 ggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaaa 155  Q
    ||||||||||| |||| | ||| |||||||||||  |||| ||  || ||||||| |||||||| ||||| ||  ||||| ||||||||||| |||||||    
T  51576102 ggttcttggttatctgctccttctgtcaatttatggattggttccttattttgataaagatgaaattttgaagtattttggatttgttgctcagcacaaa 51576201  T
Q  156 attgccgtggagctgtttggaa 177  Q
    || || || |||||||||||||    
T  51576202 atagcagtagagctgtttggaa 51576223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 16114440 - 16114647
Alignment:
Q  12 gatttgaaagctaacatgaaagaaaatactgaaannnnnnnggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgatg 111  Q
    |||||||||||| |||||| ||| |||||| |||       ||| ||| |||||||| || ||||||||||| |||||  ||||||   || ||| |||     
T  16114440 gatttgaaagcttacatgagagagaatactaaaaattcatcggctgttgttggttttatgctgcttttgtcagtttatggattgctaacttatttcgata 16114539  T
Q  112 aagatgaagttttggagctttttgcatttgttgctctgcacaaaattgccgtggagctgtttggaagcctgggttttgcaaacagagtttctggtatgat 211  Q
    ||   |||||||||||||||||||||| |||||||| |||||| |  |   ||||||||||||  | ||| ||||||||||| | || |||||||| | |    
T  16114540 aatgcgaagttttggagctttttgcatctgttgctcagcacaagacagttatggagctgtttgagaccctcggttttgcaaataaagcttctggtacgtt 16114639  T
Q  212 aatttaga 219  Q
    ||||||||    
T  16114640 aatttaga 16114647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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