View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16722_low_19 (Length: 290)

Name: NF16722_low_19
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16722_low_19
NF16722_low_19
[»] chr2 (1 HSPs)
chr2 (18-279)||(45401988-45402249)
[»] chr5 (1 HSPs)
chr5 (22-279)||(19611140-19611397)
[»] chr3 (3 HSPs)
chr3 (18-279)||(23361575-23361836)
chr3 (131-205)||(28696533-28696607)
chr3 (206-246)||(47351506-47351546)
[»] chr6 (1 HSPs)
chr6 (18-279)||(7599892-7600151)
[»] chr4 (4 HSPs)
chr4 (18-279)||(28462372-28462630)
chr4 (131-205)||(54188531-54188605)
chr4 (131-205)||(8570573-8570647)
chr4 (145-186)||(2550273-2550314)
[»] chr8 (2 HSPs)
chr8 (196-273)||(8835756-8835833)
chr8 (141-188)||(23241019-23241066)
[»] chr7 (3 HSPs)
chr7 (128-186)||(7710913-7710971)
chr7 (131-205)||(3367619-3367693)
chr7 (137-186)||(22884134-22884183)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 45401988 - 45402249
Alignment:
Q  18 caaccatcaacaattcaacgatatcgatcttcggattgcagctctagctaccaaaagacaacattgtttccctcgttgtattattgtgaaatttgacagt 117  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45401988 caaccatcaagaattcaacgatatcaatcttcggattgcagctctagctaccaaaagacagcattgtttccctcgttgtattattgtgaaatttgacagt 45402087  T
Q  118 gaaattttctcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgtttttgcaggttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45402088 gaaattttctcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgtttttgcaggttt 45402187  T
Q  218 tggtgttggttgaggtttcggtgttggatacgatttcagaggtctctttctgcactgccttt 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45402188 tggtgttggttgaggtttcggtgttggatacgatttcagaggtctctttctgcactgccttt 45402249  T

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Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 22 - 279
Target Start/End: Original strand, 19611140 - 19611397
Alignment:
Q  22 catcaacaattcaacgatatcgatcttcggattgcagctctagctaccaaaagacaacattgtttccctcgttgtattattgtgaaatttgacagtgaaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19611140 catcaacaattcaacgatatcgatcttcggattgcagctctagctatcaaaagacagcattgtttccctcgttgtattattgtgaaatttgacagtgaaa 19611239  T
Q  122 ttttctcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgtttttgcaggttttggt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19611240 ttttctcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattttttttgcaggttttggt 19611339  T
Q  222 gttggttgaggtttcggtgttggatacgatttcagaggtctctttctgcactgccttt 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19611340 gttggttgaggtttcggtgttggatacgatttcagaggtctctttctgcactgccttt 19611397  T

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Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 23361575 - 23361836
Alignment:
Q  18 caaccatcaacaattcaacgatatcgatcttcggattgcagctctagctaccaaaagacaacattgtttccctcgttgtattattgtgaaatttgacagt 117  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23361575 caaccatcaataattcaacgatatcgatcttcagattgcagctctagctaccaaaagacagcattgtttccctcgttgtattattgtgaaatttgacagt 23361674  T
Q  118 gaaattttctcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgtttttgcaggttt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23361675 gaaattttctcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattatttttgcaggttt 23361774  T
Q  218 tggtgttggttgaggtttcggtgttggatacgatttcagaggtctctttctgcactgccttt 279  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  23361775 tggtgttggttgaggtttcagtgttggatacgatttcagaggtctctttctgcaatgccttt 23361836  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 28696533 - 28696607
Alignment:
Q  131 gcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgt 205  Q
    |||||||||||||||| ||| ||  ||||||| ||||| ||| | |||||||||||||   ||||||||||||||    
T  28696533 gcaaggtattattgtgctgcctatcaggtgttcgataatttgacgcaatgaaatttgactatgttttgcaattgt 28696607  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 47351506 - 47351546
Alignment:
Q  206 ttttgcaggttttggtgttggttgaggtttcggtgttggat 246  Q
    |||||||||||| ||||||||||| ||||| ||||||||||    
T  47351506 ttttgcaggtttcggtgttggttgcggttttggtgttggat 47351546  T

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Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 7599892 - 7600151
Alignment:
Q  18 caaccatcaacaattcaacgatatcgatcttcggattgcagctctagctaccaaaagacaacattgtttccctcgttgtattattgtgaaatttgacagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||  ||||||||||||||||||||||||||    
T  7599892 caaccatcaacaattcaacgatatcgatcttcggattgcagctctagctaccaaaaggcagcattgtttccc--gttgtattattgtgaaatttgacagt 7599989  T
Q  118 gaaattttctcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgtttttgcaggttt 217  Q
    ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7599990 gaagttttttcttccaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgtttttgcaggttt 7600089  T
Q  218 tggtgttggttgaggtttcggtgttggatacgatttcagaggtctctttctgcactgccttt 279  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7600090 tggtgttggttgaggtttctgtgttggatacgatttcagaggtctctttctgcactgccttt 7600151  T

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Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 28462630 - 28462372
Alignment:
Q  18 caaccatcaacaattcaacgatatcgatcttcggattgcagctctagctaccaaaagacaacattgtttccctcgttgtattattgtgaaatttgacagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||  ||||||||||||||||||||||||||    
T  28462630 caaccatcaacaattcaacgatatcgatcttcggattgcagctctagctaccaaaaggcagcattgtttccc--gttgtattattgtgaaatttgacagt 28462533  T
Q  118 gaaattttctcttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgtttttgcaggttt 217  Q
    ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28462532 gaagtttt-tcttccaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgtttttgcaggttt 28462434  T
Q  218 tggtgttggttgaggtttcggtgttggatacgatttcagaggtctctttctgcactgccttt 279  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28462433 tggtgttggttgaggtttctgtgttggatacgatttcagaggtctctttctgcactgccttt 28462372  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 54188605 - 54188531
Alignment:
Q  131 gcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgt 205  Q
    |||||||||||||||| ||| ||  ||||||| ||||| ||| |||||||||||||||   ||||||||||||||    
T  54188605 gcaaggtattattgtgctgcctatcaggtgttcgataatttgactcaatgaaatttgactgtgttttgcaattgt 54188531  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 8570573 - 8570647
Alignment:
Q  131 gcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgt 205  Q
    |||||||||||||||| ||| ||  ||||||| ||||| ||| | |||||||||||||   ||||||||||||||    
T  8570573 gcaaggtattattgtgctgcctatcaggtgttcgataatttgacgcaatgaaatttgactatgttttgcaattgt 8570647  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 2550314 - 2550273
Alignment:
Q  145 tgttgcataggaggtgtttgataaattgtctcaatgaaattt 186  Q
    ||||||||| |||||||||||||| ||| |||||||||||||    
T  2550314 tgttgcatatgaggtgtttgataatttgactcaatgaaattt 2550273  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 8835833 - 8835756
Alignment:
Q  196 ttgcaattgtttttgcaggttttggtgttggttgaggtttcggtgttggatacgatttcagaggtctctttctgcact 273  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||  ||||||| |||||||||||||||||    
T  8835833 ttgcaattgtttttgcagttttttgtgttggttgaggtttcggtgttggatgggatttcaaaggtctctttctgcact 8835756  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 23241019 - 23241066
Alignment:
Q  141 attgtgttgcataggaggtgtttgataaattgtctcaatgaaatttga 188  Q
    ||||||||||||| || ||||||||||| ||| |||||||||||||||    
T  23241019 attgtgttgcatatgaagtgtttgataatttgactcaatgaaatttga 23241066  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 7710913 - 7710971
Alignment:
Q  128 cttgcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 186  Q
    |||||||||||| ||||||||||||| |||||||||||||| ||| |||||||||||||    
T  7710913 cttgcaaggtatgattgtgttgcatatgaggtgtttgataatttgactcaatgaaattt 7710971  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 3367693 - 3367619
Alignment:
Q  131 gcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgt 205  Q
    |||||||||||||||| ||| ||  ||||||||||||| ||| |||||||||||||||   ||||||||||||||    
T  3367693 gcaaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgt 3367619  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 22884134 - 22884183
Alignment:
Q  137 tattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 186  Q
    |||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  22884134 tattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 22884183  T

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