View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16722_low_20 (Length: 279)
Name: NF16722_low_20
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16722_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 45934647 - 45934379
Alignment:
| Q |
1 |
gggaacatatcgcctattgatgtcatcactcatgttccaattttatgcgaggataaggacattccatatgtatatgtctcatctaaagaagtaagtaacc |
100 |
Q |
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| T |
45934647 |
gggaacatatcgcctattgatgtcatcactcatgttccgattttatgcgaggataaggacattccatatgtatatgtctcatctaaagaagtaagtaacc |
45934548 |
T |
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| Q |
101 |
aactttgcgctgaatcttgatgctttttatcatttagttaatactattgactgcctgtttccctaatctctctttagaataaggaaaatttgttgtcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45934547 |
aactttgcgctgaatcttgatgctttttatcatttagttaatactattgactgcctgttttcctaatctctctttagaataaggaaaatttgttgtcata |
45934448 |
T |
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| Q |
201 |
catatagcctgatgttaatttgatgtcataaataactaaaagttgaggctttttcctcattgatgatgt |
269 |
Q |
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| T |
45934447 |
tacatagcctgatgttaatttgatgtcataaataactaaaagttgaggctttttcctcattgatgatgt |
45934379 |
T |
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