View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16722_low_21 (Length: 269)

Name: NF16722_low_21
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16722_low_21
NF16722_low_21
[»] chr2 (32 HSPs)
chr2 (13-251)||(43808499-43808737)
chr2 (160-249)||(33267572-33267661)
chr2 (174-249)||(18962108-18962183)
chr2 (174-249)||(9478224-9478299)
chr2 (174-249)||(11307237-11307312)
chr2 (174-249)||(17952771-17952846)
chr2 (174-244)||(28902007-28902077)
chr2 (177-249)||(3102618-3102690)
chr2 (161-249)||(14209202-14209290)
chr2 (64-129)||(43456649-43456714)
chr2 (170-220)||(3458610-3458661)
chr2 (174-249)||(29430681-29430755)
chr2 (70-129)||(29430821-29430880)
chr2 (84-126)||(1625967-1626009)
chr2 (189-246)||(5998787-5998844)
chr2 (176-249)||(37053519-37053592)
chr2 (208-246)||(42826314-42826352)
chr2 (174-207)||(1160814-1160847)
chr2 (177-249)||(3423841-3423913)
chr2 (95-132)||(18525210-18525247)
chr2 (161-206)||(19243577-19243622)
chr2 (169-249)||(34339048-34339128)
chr2 (174-235)||(40722547-40722606)
chr2 (216-249)||(44458450-44458483)
chr2 (72-129)||(44606060-44606117)
chr2 (89-129)||(1741999-1742039)
chr2 (176-247)||(3673734-3673805)
chr2 (174-218)||(5043630-5043674)
chr2 (195-242)||(5045248-5045295)
chr2 (219-247)||(13864577-13864605)
chr2 (174-206)||(31740029-31740061)
chr2 (174-206)||(37292417-37292449)
[»] chr5 (27 HSPs)
chr5 (174-246)||(35135732-35135804)
chr5 (174-249)||(32059659-32059733)
chr5 (160-244)||(32197657-32197741)
chr5 (160-249)||(11684348-11684435)
chr5 (181-249)||(29014681-29014749)
chr5 (174-249)||(36539671-36539746)
chr5 (176-247)||(37063146-37063217)
chr5 (176-243)||(41277422-41277490)
chr5 (64-115)||(7550460-7550511)
chr5 (89-124)||(8090004-8090039)
chr5 (75-129)||(11297149-11297203)
chr5 (72-122)||(12407680-12407730)
chr5 (183-249)||(29365544-29365609)
chr5 (81-131)||(37611174-37611224)
chr5 (81-131)||(37787904-37787954)
chr5 (208-249)||(4991048-4991088)
chr5 (177-249)||(6733966-6734037)
chr5 (180-248)||(7096203-7096271)
chr5 (177-249)||(20982208-20982280)
chr5 (58-131)||(40534260-40534333)
chr5 (71-131)||(4619768-4619828)
chr5 (174-206)||(8158371-8158403)
chr5 (191-243)||(8571302-8571353)
chr5 (89-129)||(10152397-10152437)
chr5 (99-131)||(11406255-11406287)
chr5 (84-128)||(12242672-12242716)
chr5 (89-129)||(14980572-14980612)
[»] chr1 (25 HSPs)
chr1 (176-249)||(45107548-45107620)
chr1 (174-238)||(48830146-48830210)
chr1 (70-125)||(4033965-4034020)
chr1 (176-241)||(1232964-1233029)
chr1 (74-127)||(16980868-16980921)
chr1 (176-236)||(30815707-30815767)
chr1 (185-241)||(1730825-1730881)
chr1 (183-249)||(48282058-48282125)
chr1 (82-129)||(49692012-49692059)
chr1 (195-249)||(3244829-3244883)
chr1 (72-130)||(4757400-4757458)
chr1 (84-126)||(6557039-6557081)
chr1 (184-249)||(33339500-33339565)
chr1 (72-129)||(38867783-38867838)
chr1 (173-249)||(870970-871046)
chr1 (92-129)||(6262801-6262838)
chr1 (76-113)||(7707269-7707306)
chr1 (174-249)||(28467377-28467454)
chr1 (89-130)||(28467495-28467536)
chr1 (72-129)||(34536221-34536278)
chr1 (174-249)||(4200154-4200229)
chr1 (211-243)||(7357455-7357487)
chr1 (174-206)||(9656618-9656650)
chr1 (174-241)||(15360827-15360894)
chr1 (174-206)||(52286646-52286678)
[»] scaffold0590 (1 HSPs)
scaffold0590 (175-249)||(1145-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (175-249)||(2756-2830)
[»] chr8 (23 HSPs)
chr8 (71-129)||(21130675-21130733)
chr8 (178-242)||(4558730-4558794)
chr8 (176-249)||(10722556-10722629)
chr8 (160-235)||(26215435-26215510)
chr8 (174-249)||(28769409-28769484)
chr8 (191-242)||(2595084-2595134)
chr8 (174-249)||(34788497-34788572)
chr8 (174-228)||(42237492-42237547)
chr8 (176-206)||(2699274-2699304)
chr8 (75-129)||(9700064-9700118)
chr8 (75-129)||(14949929-14949983)
chr8 (175-249)||(26717182-26717254)
chr8 (91-124)||(27412851-27412884)
chr8 (172-247)||(29262942-29263016)
chr8 (82-131)||(30191101-30191150)
chr8 (174-249)||(3645886-3645961)
chr8 (217-249)||(6918956-6918988)
chr8 (58-114)||(10923674-10923730)
chr8 (174-249)||(11056737-11056812)
chr8 (70-130)||(11376765-11376825)
chr8 (217-249)||(11952478-11952510)
chr8 (74-126)||(31915245-31915297)
chr8 (170-249)||(40357824-40357903)
[»] chr6 (24 HSPs)
chr6 (159-241)||(2034494-2034575)
chr6 (173-247)||(32513752-32513825)
chr6 (174-249)||(7351678-7351753)
chr6 (174-249)||(10452430-10452505)
chr6 (82-129)||(1669758-1669805)
chr6 (84-131)||(20368142-20368189)
chr6 (75-129)||(2460104-2460158)
chr6 (176-249)||(3217262-3217335)
chr6 (174-206)||(1402964-1402996)
chr6 (174-249)||(10032496-10032571)
chr6 (75-131)||(27693392-27693448)
chr6 (70-129)||(32577934-32577993)
chr6 (208-246)||(30817671-30817709)
chr6 (75-129)||(30863309-30863363)
chr6 (74-128)||(30865547-30865601)
chr6 (192-249)||(24332868-24332924)
chr6 (172-247)||(27693507-27693581)
chr6 (70-127)||(27857423-27857480)
chr6 (76-129)||(32917260-32917313)
chr6 (189-245)||(33911366-33911422)
chr6 (177-220)||(2027479-2027523)
chr6 (181-249)||(8010282-8010349)
chr6 (177-220)||(28660833-28660877)
chr6 (75-119)||(31668430-31668474)
[»] chr3 (26 HSPs)
chr3 (176-253)||(25459696-25459772)
chr3 (82-130)||(2175809-2175857)
chr3 (180-249)||(16790432-16790501)
chr3 (82-127)||(25182947-25182992)
chr3 (174-249)||(25183058-25183134)
chr3 (178-249)||(38462206-38462277)
chr3 (217-249)||(49772781-49772813)
chr3 (82-129)||(1810040-1810087)
chr3 (174-249)||(32703063-32703138)
chr3 (89-128)||(40880915-40880954)
chr3 (72-119)||(47584523-47584570)
chr3 (75-130)||(50015948-50016003)
chr3 (89-131)||(21574551-21574593)
chr3 (176-249)||(22232751-22232824)
chr3 (85-123)||(47132063-47132101)
chr3 (58-131)||(50004713-50004787)
chr3 (174-234)||(1395611-1395671)
chr3 (82-127)||(14548681-14548726)
chr3 (177-253)||(33965564-33965641)
chr3 (75-131)||(2304224-2304280)
chr3 (174-249)||(28779281-28779356)
chr3 (174-229)||(37689454-37689509)
chr3 (174-249)||(41028921-41028996)
chr3 (170-233)||(42809242-42809305)
chr3 (174-249)||(43116498-43116573)
chr3 (82-122)||(50211805-50211845)
[»] chr7 (20 HSPs)
chr7 (174-249)||(49060465-49060540)
chr7 (70-129)||(3500913-3500974)
chr7 (64-130)||(22387838-22387904)
chr7 (93-127)||(31149705-31149739)
chr7 (93-127)||(31167997-31168031)
chr7 (174-245)||(40428483-40428555)
chr7 (176-249)||(45593791-45593864)
chr7 (174-249)||(36370595-36370669)
chr7 (70-114)||(44151424-44151468)
chr7 (201-249)||(45078218-45078265)
chr7 (179-249)||(47004012-47004082)
chr7 (219-249)||(27389308-27389338)
chr7 (84-129)||(44808221-44808266)
chr7 (82-130)||(8094368-8094416)
chr7 (174-249)||(22759111-22759186)
chr7 (174-249)||(26935620-26935695)
chr7 (174-245)||(27481364-27481435)
chr7 (75-131)||(36537969-36538025)
chr7 (174-249)||(39551618-39551693)
chr7 (174-206)||(40689056-40689088)
[»] chr4 (30 HSPs)
chr4 (182-249)||(28581988-28582054)
chr4 (70-124)||(18628501-18628555)
chr4 (75-129)||(27123305-27123359)
chr4 (72-129)||(2996636-2996693)
chr4 (176-235)||(437504-437564)
chr4 (171-249)||(22684583-22684661)
chr4 (90-129)||(27725277-27725316)
chr4 (72-127)||(33534119-33534174)
chr4 (177-243)||(42321952-42322018)
chr4 (174-249)||(44319875-44319949)
chr4 (174-249)||(54325107-54325182)
chr4 (174-249)||(55437356-55437429)
chr4 (176-249)||(24193510-24193583)
chr4 (195-249)||(32920491-32920543)
chr4 (182-247)||(47970245-47970310)
chr4 (82-131)||(1554968-1555017)
chr4 (174-246)||(4071811-4071882)
chr4 (177-206)||(5219573-5219602)
chr4 (176-249)||(23819015-23819087)
chr4 (177-249)||(36734818-36734890)
chr4 (91-124)||(52428733-52428766)
chr4 (219-252)||(52645622-52645655)
chr4 (176-249)||(54414874-54414950)
chr4 (195-248)||(54986348-54986400)
chr4 (195-255)||(8422928-8422988)
chr4 (180-216)||(12162911-12162947)
chr4 (174-249)||(21157693-21157768)
chr4 (175-247)||(32724046-32724118)
chr4 (174-249)||(49219064-49219139)
chr4 (82-138)||(56007734-56007789)
[»] scaffold0153 (2 HSPs)
scaffold0153 (174-206)||(6568-6600)
scaffold0153 (174-206)||(13588-13620)
[»] scaffold0024 (1 HSPs)
scaffold0024 (160-235)||(21334-21409)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 43808737 - 43808499
Alignment:
Q  13 agcaaaggagacttaaagtgaacttataatgagaacatgtttagattgactttattcactgacataaatacttgtaagactatttgagagagcttatgaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808737 agcaaaggagacttaaagtgaacttataatgagaacatgtttagattgactttattcactgacataaatacttgtaagactatttgagagagcttatgaa 43808638  T
Q  113 aataacttatgacatgttcgattgtccataagttattttcagcttattagcttatagaaacagcttatatgaaaatagtttaactttattttatgtttgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808637 aataacttatgacatgttcgattgtccataagttattttcagcttattagcttatagaaacagcttatatgaaaatagtttaactttattttatgtttgt 43808538  T
Q  213 tataaaaaatagcttatacataaacacttatatgatacg 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43808537 tataaaaaatagcttatacataaacacttatatgatacg 43808499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 33267572 - 33267661
Alignment:
Q  160 tagcttatagaaacagcttatatgaaaatagtttaactttatttta-tgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| | |||||| |||||||||| |||||||||||||    
T  33267572 tagcttataaaaacagcttatatgaaaacagtttaactttattttactgtttgttat-agaaatagattatacataagcacttatatgata 33267661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 18962108 - 18962183
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||| ||||||||||||||||||  |||||||| |||||||||| |||||||| |||||| ||||||    
T  18962108 agcttatatgaaaacagtttaactttattttatcttttgttat-aaaaatagctaatacataagcacttacatgata 18962183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 9478299 - 9478224
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||||| ||| | |||||||||| |  ||||||| ||| ||||||||||||||||||||||||||||    
T  9478299 agcttatatgaaaatattttgagtttattttatctactgttatagaaa-tagcttatacataaacacttatatgata 9478224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 11307312 - 11307237
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtttgtt-ataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||| |||||||||||||| |||||| ||||| |||||| | |||||||||||||||||| ||||||| |||||||    
T  11307312 agcttttatgaaaatagtttgactttactttatctttgttaaaaaaaaatagcttatacat-aacacttttatgata 11307237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 17952771 - 17952846
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||||||||| ||||||||||||  |||||||| | |||||||||||| |||| | |||||||||||    
T  17952771 agcttatatgaaaatagtttgactttattttatcttttgttat-agaaatagcttatatataagctcttatatgata 17952846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 28902077 - 28902007
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttata 244  Q
    |||||||||||||| ||||||| |||||||||  || ||||||||||| |||||||||||||| ||||||||    
T  28902077 agcttatatgaaaacagtttaattttattttaacttatgttataaaaa-tagcttatacataagcacttata 28902007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 3102690 - 3102618
Alignment:
Q  177 ttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||| |||||||||| |||||||||||| ||| | |||||||| |||||||||||||| || ||||||||||    
T  3102690 ttatataaaaatagtttgactttattttatattttgctataaaaa-tagcttatacataagcagttatatgata 3102618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 14209290 - 14209202
Alignment:
Q  161 agcttatagaaacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||| |||| |||||||||||||| ||||| | ||||||||||  ||||||||   |||||||||| ||| ||||||||||||||||    
T  14209290 agcttatggaaatagcttatatgaaaacagtttgaatttattttatcttttgttat-tgaaatagcttagacagaaacacttatatgata 14209202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 43456649 - 43456714
Alignment:
Q  64 ttattcactgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    ||||| ||| ||||||| |||||||||||| ||||| ||||||| |||||| |||| |||||||||    
T  43456649 ttatttactcacataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgt 43456714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 3458661 - 3458610
Alignment:
Q  170 aaacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaa 220  Q
    |||||||||||||||||| ||||| ||||||||||||  |||||||||||||    
T  3458661 aaacagcttatatgaaaaaagtttgactttattttatcttttgttataaaaa 3458610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 29430755 - 29430681
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||| ||||| ||||| ||||||||| |  ||||||||| ||| |||||||||||||||| ||| |||||||    
T  29430755 agcttataagaaaacagtttgactttatttaacttttgttatagaaa-tagcttatacataaacccttgtatgata 29430681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 29430880 - 29430821
Alignment:
Q  70 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    ||||||||||| ||||||  |||||||||  ||| |||||||||||| ||||||||||||    
T  29430880 actgacataaacacttgtgggactatttggaagaacttatgaaaatagcttatgacatgt 29430821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 1626009 - 1625967
Alignment:
Q  84 ttgtaagactatttgagagagcttatgaaaataacttatgaca 126  Q
    |||||||||||||||||||| ||||||||| || |||||||||    
T  1626009 ttgtaagactatttgagagaacttatgaaagtagcttatgaca 1625967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 5998787 - 5998844
Alignment:
Q  189 agtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatg 246  Q
    |||||||||||||||||| ||| ||||||||| |||||||||| ||||||| |||||||    
T  5998787 agtttaactttattttatcttttgttataaaa-atagcttatatataaacaattatatg 5998844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 37053592 - 37053519
Alignment:
Q  176 cttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||| ||||| |||||||||||| || |||||| | ||||||  ||||||||| |||||||||||||    
T  37053592 cttatatgaaaacagtttgactttattttattttctgttat-agaaatagtctatacataagcacttatatgata 37053519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 42826352 - 42826314
Alignment:
Q  208 tttgttataaaaaatagcttatacataaacacttatatg 246  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  42826352 tttgttataaaaaatagcttatatataagcacttatatg 42826314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 1160814 - 1160847
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatg 207  Q
    |||||||||||||||||||| |||||||||||||    
T  1160814 agcttatatgaaaatagtttgactttattttatg 1160847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 3423841 - 3423913
Alignment:
Q  177 ttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||||||| ||| ||||||||||||  |||| ||  ||||||| ||||||||||||||||| |||||||    
T  3423841 ttatatgaaaataatttgactttattttatcttttggta-caaaaataacttatacataaacacttgtatgata 3423913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 18525210 - 18525247
Alignment:
Q  95 tttgagagagcttatgaaaataacttatgacatgttcg 132  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  18525210 tttgagagagcttatgaaaatagcttatgacatattcg 18525247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 19243622 - 19243577
Alignment:
Q  161 agcttatagaaacagcttatatgaaaatagtttaactttattttat 206  Q
    |||||||||||||||||||||| |||| | ||||| ||||||||||    
T  19243622 agcttatagaaacagcttatatcaaaacaatttaaatttattttat 19243577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 34339128 - 34339048
Alignment:
Q  169 gaaacagcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||||||| ||||| ||| | |||||||||||| ||| | |||| |||| || |||||||||| |||||||||||||    
T  34339128 gaaacagcttatacgaaaacagtctgactttattttatctttagctatagaaaa-agtttatacataagcacttatatgata 34339048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 40722547 - 40722606
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataa 235  Q
    |||||||||||||| ||||  |||||||||||| |||||||||||||| ||||||| |||||    
T  40722547 agcttatatgaaaacagttcgactttattttat-tttgttataaaaaa-agcttatgcataa 40722606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 44458450 - 44458483
Alignment:
Q  216 aaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||||||||||||||| ||||||||||||    
T  44458450 aaaaaatagcttatacataaatacttatatgata 44458483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 44606060 - 44606117
Alignment:
Q  72 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    |||||||| |||||||| |||| ||||  ||| |||||||||| ||||||||||||||    
T  44606060 tgacataagtacttgtacgactgtttggaagaacttatgaaaacaacttatgacatgt 44606117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 1741999 - 1742039
Alignment:
Q  89 agactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    |||||||||| ||||||||||| ||| ||||||||||||||    
T  1741999 agactatttgggagagcttatggaaacaacttatgacatgt 1742039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 3673805 - 3673734
Alignment:
Q  176 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatga 247  Q
    |||||||||||| | ||||||||||||||||  |||||||| | ||||| || |||||||| |||||||||||    
T  3673805 cttatatgaaaacaatttaactttattttatattttgttat-agaaataactaatacataagcacttatatga 3673734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 5043630 - 5043674
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtttgttataaa 218  Q
    |||||||||||||| ||||| |||||||||||| ||| |||||||    
T  5043630 agcttatatgaaaacagtttgactttattttatctttcttataaa 5043674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 5045248 - 5045295
Alignment:
Q  195 actttattttatgttt-gttataaaaaatagcttatacataaacactta 242  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  5045248 actttattttatcttttgttataaaa-atagcttatacataaacactta 5045295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 247
Target Start/End: Complemental strand, 13864605 - 13864577
Alignment:
Q  219 aaatagcttatacataaacacttatatga 247  Q
    |||||||||||||||||||||||||||||    
T  13864605 aaatagcttatacataaacacttatatga 13864577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 31740029 - 31740061
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat 206  Q
    |||||||||||||||||||| ||||||||||||    
T  31740029 agcttatatgaaaatagtttgactttattttat 31740061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 37292417 - 37292449
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat 206  Q
    |||||||||||||||||||| ||||||||||||    
T  37292417 agcttatatgaaaatagttttactttattttat 37292449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 35135732 - 35135804
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatg 246  Q
    |||||||||||||||||||| ||||||||||||  |||||||| | ||||| ||||||||||||||||||||||    
T  35135732 agcttatatgaaaatagtttgactttattttatcttttgttat-agaaatatcttatacataaacacttatatg 35135804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 32059659 - 32059733
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||| ||||| |||||||||||| || ||||  ||||| ||||||||||||| |||||||||||||    
T  32059659 agcttatatgaaaacagtttgactttattttatcttagtta-caaaaacagcttatacataagcacttatatgata 32059733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 32197741 - 32197657
Alignment:
Q  160 tagcttatagaaacagcttatatgaaaatagtttaactttat-tttatgtttgttataaaaaatagcttatacataaacacttata 244  Q
    |||||||| ||||||||||||||||||||||||| ||||||| |  || ||||||| || |||||| |||||| ||||||||||||    
T  32197741 tagcttatggaaacagcttatatgaaaatagtttgactttatataaatttttgtta-aataaatagtttatacgtaaacacttata 32197657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 11684435 - 11684348
Alignment:
Q  160 tagcttatagaaacagcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||  ||| |||||||||||||| ||||| ||| | || ||| ||||||||||||| |||||||||||| | |||||||||||||    
T  11684435 tagcttatgaaaatagcttatatgaaaacagtttcactattttatat-tttgttataaaaa-tagcttatacattagcacttatatgata 11684348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 29014749 - 29014681
Alignment:
Q  181 atgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||||||| |||| ||||||| |||| | ||||||| |||||||||||| |||||||||||||||    
T  29014749 atgaaaatagtttgacttgattttatcgtttatcataaaaa-tagcttatacatgaacacttatatgata 29014681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 36539746 - 36539671
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtttgttataaa-aaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||| || || |||||||||||| ||| | ||||| |||||||||| |||||| |||||||||||||    
T  36539746 agcttatatgaaaacaggttgactttattttatcttt-tgataaacaaatagcttacacataagcacttatatgata 36539671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 37063146 - 37063217
Alignment:
Q  176 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatga 247  Q
    |||||||||||||||||| ||||||||||||  |||||||| | |||||| |||||||||| || ||||||||    
T  37063146 cttatatgaaaatagtttgactttattttatcttttgttat-agaaatagtttatacataagcatttatatga 37063217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 41277422 - 41277490
Alignment:
Q  176 cttatatgaaaatagtttaactttattttatgtttg-ttataaaaaatagcttatacataaacacttat 243  Q
    |||||||||||| ||||| |||||||||||| |||| ||| |||||| ||||| ||||||| |||||||    
T  41277422 cttatatgaaaacagtttgactttattttatctttgattacaaaaaaaagcttttacataagcacttat 41277490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 7550460 - 7550511
Alignment:
Q  64 ttattcactgacataaatacttgtaagactatttgagagagcttatgaaaat 115  Q
    |||| ||||||||||| ||||||| ||||| |||||||||||||||| ||||    
T  7550460 ttatccactgacataattacttgtgagactctttgagagagcttatggaaat 7550511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 8090039 - 8090004
Alignment:
Q  89 agactatttgagagagcttatgaaaataacttatga 124  Q
    |||||||||||||||||||||||||| |||||||||    
T  8090039 agactatttgagagagcttatgaaaacaacttatga 8090004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 11297149 - 11297203
Alignment:
Q  75 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    |||||| |||||||||||| ||||| |||||||||| ||| |||||| |||||||    
T  11297149 cataaacacttgtaagactgtttgaaagagcttatggaaacaacttaagacatgt 11297203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 12407680 - 12407730
Alignment:
Q  72 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttat 122  Q
    ||||||||| |||||| ||||  ||||||||||||||||||||| ||||||    
T  12407680 tgacataaacacttgtgagacggtttgagagagcttatgaaaatgacttat 12407730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 29365609 - 29365544
Alignment:
Q  183 gaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||||| || |||| ||| | ||||||| |||||||||||| | |||||||||||||    
T  29365609 gaaaatagtttaacttgatgttatttttatcataaaaa-tagcttatacatgagcacttatatgata 29365544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 37611174 - 37611224
Alignment:
Q  81 tacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 131  Q
    ||||||| ||| | |||||||||||||||||||| ||||| ||||||||||    
T  37611174 tacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttc 37611224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 37787904 - 37787954
Alignment:
Q  81 tacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 131  Q
    ||||||| ||| | |||||||||||||||||||| ||||| ||||||||||    
T  37787904 tacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttc 37787954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 4991048 - 4991088
Alignment:
Q  208 tttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  4991048 tttgttataaaa-atagcttatacacaaacacttatatgata 4991088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 6733966 - 6734037
Alignment:
Q  177 ttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||||| | |||| ||||||||||| ||| |||||||||| ||| |||| |||||||||||||||||||    
T  6733966 ttatatgaaaacaattta-ctttattttatctttcgttataaaaa-tagattatgcataaacacttatatgata 6734037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 7096203 - 7096271
Alignment:
Q  180 tatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgat 248  Q
    ||||||||| |||| |||||||||||| ||| |||||| ||| |||||||||||||| ||||| ||||||    
T  7096203 tatgaaaatggtttgactttattttatcttttgttatagaaa-tagcttatacataagcacttgtatgat 7096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 20982208 - 20982280
Alignment:
Q  177 ttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||  | || ||||||||||||  ||||||||| ||| |||||||||||||| |||||||||||||    
T  20982208 ttatatgaaaacgggttgactttattttatcctttgttatagaaa-tagcttatacataagcacttatatgata 20982280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 40534333 - 40534260
Alignment:
Q  58 ttgactttattcactgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 131  Q
    |||| |||||| ||||||||||| |||||| | ||| |||  ||||||||||| || || ||||||||||||||    
T  40534333 ttgagtttatttactgacataaacacttgtgatactgtttaggagagcttatggaagtagcttatgacatgttc 40534260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 4619828 - 4619768
Alignment:
Q  71 ctgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 131  Q
    |||||||||  ||||| || ||| |||| ||||||||||||||| |||| |||||||||||    
T  4619828 ctgacataagcacttgcaacactgtttgggagagcttatgaaaacaactaatgacatgttc 4619768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 8158371 - 8158403
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat 206  Q
    |||||||||||||||| ||||||||||||||||    
T  8158371 agcttatatgaaaataatttaactttattttat 8158403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 8571353 - 8571302
Alignment:
Q  191 tttaactttattttatgtttgttataaaaaatagcttatacataaacacttat 243  Q
    |||||||||||||| | ||||||||| |||||| | |||||||||||||||||    
T  8571353 tttaactttattttttctttgttata-aaaatatcatatacataaacacttat 8571302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 10152437 - 10152397
Alignment:
Q  89 agactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    |||||||||  ||||||||||||||| ||||||||||||||    
T  10152437 agactattttggagagcttatgaaaacaacttatgacatgt 10152397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 11406287 - 11406255
Alignment:
Q  99 agagagcttatgaaaataacttatgacatgttc 131  Q
    |||||||||||||||||||||||||| ||||||    
T  11406287 agagagcttatgaaaataacttatgatatgttc 11406255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 12242672 - 12242716
Alignment:
Q  84 ttgtaagactatttgagagagcttatgaaaataacttatgacatg 128  Q
    |||| ||| |||||||||||||||||| ||| |||||||||||||    
T  12242672 ttgtgagattatttgagagagcttatggaaaaaacttatgacatg 12242716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 14980612 - 14980572
Alignment:
Q  89 agactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    ||||| ||||||||||||||| ||||| |||||||||||||    
T  14980612 agactgtttgagagagcttataaaaatgacttatgacatgt 14980572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 45107620 - 45107548
Alignment:
Q  176 cttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||||||| |||||||||||| ||| |||| | |||||||||||| |||| |||||||||||||    
T  45107620 cttatatgaaaatagtttgactttattttatttttcttat-agaaatagcttatagataagcacttatatgata 45107548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 48830146 - 48830210
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaaca 238  Q
    |||||||||||||||||||| |||||||||||| |||| ||  | ||||| ||||||||||||||    
T  48830146 agcttatatgaaaatagtttgactttattttatctttggtaatagaaataacttatacataaaca 48830210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 4033965 - 4034020
Alignment:
Q  70 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgac 125  Q
    |||| |||||| |||||| ||| | |||||||||||||||||||||||||||||||    
T  4033965 actggcataaacacttgtgagattgtttgagagagcttatgaaaataacttatgac 4034020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 1232964 - 1233029
Alignment:
Q  176 cttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacactt 241  Q
    |||||| ||||||| ||||||||||||||||| |||||||| ||||| ||||||| |||||||||||    
T  1232964 cttatacgaaaataatttaactttattttatgttttgttat-aaaaacagcttatgcataaacactt 1233029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 16980921 - 16980868
Alignment:
Q  74 acataaatacttgtaagactatttgagagagcttatgaaaataacttatgacat 127  Q
    |||||| ||||||| |||||||||||||||||||||| ||| |||||| |||||    
T  16980921 acataagtacttgtgagactatttgagagagcttatggaaacaacttacgacat 16980868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 30815707 - 30815767
Alignment:
Q  176 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaa 236  Q
    |||||||||||||||||||||||||||||||  ||||||||| |||| |||||| |||||||    
T  30815707 cttatatgaaaatagtttaactttattttatcttttgttatagaaaa-agcttagacataaa 30815767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 1730881 - 1730825
Alignment:
Q  185 aaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacactt 241  Q
    ||||||||| |||||||||||| |||| |  |||||||||||||||||||| |||||    
T  1730881 aaatagtttgactttattttatctttggttaaaaaaatagcttatacataagcactt 1730825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 48282125 - 48282058
Alignment:
Q  183 gaaaatagtttaactttattttatgtttgttataaa-aaatagcttatacataaacacttatatgata 249  Q
    ||||||||||| |||||||||||| ||| || || | ||||||||| ||||||| |||||||||||||    
T  48282125 gaaaatagtttgactttattttatctttcttttatagaaatagcttttacataagcacttatatgata 48282058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 49692012 - 49692059
Alignment:
Q  82 acttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    |||||| ||||| ||||||||| |||||||||||| ||||||||||||    
T  49692012 acttgtgagactgtttgagagaacttatgaaaatagcttatgacatgt 49692059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 3244883 - 3244829
Alignment:
Q  195 actttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||||||||||  || || ||||||||||||||||| |||||| ||||||    
T  3244883 actttattttatgttttgtacaagaaatagcttatacataagcacttacatgata 3244829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 4757458 - 4757400
Alignment:
Q  72 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 130  Q
    ||||||||| |||||| |||| |||||  ||| |||||||||| |||||||||||||||    
T  4757458 tgacataaacacttgtgagaccatttggcagaacttatgaaaacaacttatgacatgtt 4757400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 6557081 - 6557039
Alignment:
Q  84 ttgtaagactatttgagagagcttatgaaaataacttatgaca 126  Q
    |||| ||||||||||||||| |||||||||||| |||||||||    
T  6557081 ttgtgagactatttgagagaacttatgaaaatagcttatgaca 6557039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 33339500 - 33339565
Alignment:
Q  184 aaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||||||||| ||||||| ||| | |||| ||| |||||||||||||||||| |||||||||    
T  33339500 aaaatagtttaacttcattttatcttttggtatagaaa-tagcttatacataaacacctatatgata 33339565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 38867783 - 38867838
Alignment:
Q  72 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    ||||||||| ||||||  |||| |||||||||||||||| ||||||||||||| ||||    
T  38867783 tgacataaacacttgt--gactgtttgagagagcttatggaaataacttatgatatgt 38867838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 871046 - 870970
Alignment:
Q  173 cagcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||||||||| |  || |||| ||||||| ||| |||||||||| ||| |||||||||| |||||||||||||    
T  871046 cagcttatatgaaaaaaaattgacttaattttatcttttgttataaaaa-tagtttatacataagcacttatatgata 870970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 6262838 - 6262801
Alignment:
Q  92 ctatttgagagagcttatgaaaataacttatgacatgt 129  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  6262838 ctatttgggagagcttatgaaaataacttatgatatgt 6262801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 7707306 - 7707269
Alignment:
Q  76 ataaatacttgtaagactatttgagagagcttatgaaa 113  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  7707306 ataaatacttgtaagattatttgagagagtttatgaaa 7707269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 28467377 - 28467454
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat-gtttgttata-aaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||||| ||| ||||||||||||  ||||||||| | |||||| |||||||||| ||| | |||||||    
T  28467377 agcttatatgaaaataatttgactttattttatcttttgttatacacaaataggttatacataatcacctgtatgata 28467454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 28467536 - 28467495
Alignment:
Q  89 agactatttgagagagcttatgaaaataacttatgacatgtt 130  Q
    |||||||||| ||||| ||||| |||||||||||||||||||    
T  28467536 agactatttgggagagattatggaaataacttatgacatgtt 28467495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 34536278 - 34536221
Alignment:
Q  72 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    ||||||||| |||||| ||||| |||||||  ||||||||||| | ||||||||||||    
T  34536278 tgacataaacacttgtgagactgtttgagatggcttatgaaaacagcttatgacatgt 34536221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 4200229 - 4200154
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||| |  || |||||||||||| ||| |||||||||| || |||||| ||||||||||| ||||||    
T  4200229 agcttatatgaaaacaacttgactttattttatcttttgttataaaaa-taacttatatataaacacttagatgata 4200154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 7357487 - 7357455
Alignment:
Q  211 gttataaaaaatagcttatacataaacacttat 243  Q
    ||||||||||||||||||||||||||| |||||    
T  7357487 gttataaaaaatagcttatacataaacgcttat 7357455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 9656650 - 9656618
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat 206  Q
    |||||||||||||||| ||||||||||||||||    
T  9656650 agcttatatgaaaataatttaactttattttat 9656618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 15360894 - 15360827
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacactt 241  Q
    |||||||||||||| ||||| ||||||||||||  |||||||| | ||||| || ||||||||||||||    
T  15360894 agcttatatgaaaacagtttgactttattttatcttttgttat-agaaataactaatacataaacactt 15360827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 52286678 - 52286646
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat 206  Q
    ||||||||||||||| |||||||||||||||||    
T  52286678 agcttatatgaaaattgtttaactttattttat 52286646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 1145 - 1219
Alignment:
Q  175 gcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||| |||||||| |||||||||||| ||| |||||| ||| |||||||||||||| |||||||||||||    
T  1145 gcttatatgagaatagtttgactttattttatcttttgttatagaaa-tagcttatacataagcacttatatgata 1219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 2830 - 2756
Alignment:
Q  175 gcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||| |||||||| |||||||||||| ||| |||||| ||| |||||||||||||| |||||||||||||    
T  2830 gcttatatgagaatagtttgactttattttatcttttgttatagaaa-tagcttatacataagcacttatatgata 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 21130733 - 21130675
Alignment:
Q  71 ctgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    ||||||||||||||||| ||||| |||||||||||||||| ||||| ||| ||||||||    
T  21130733 ctgacataaatacttgtgagactgtttgagagagcttatggaaatagcttttgacatgt 21130675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 4558794 - 4558730
Alignment:
Q  178 tatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacactta 242  Q
    |||||||||||| ||||||||||||||||  ||| |||| | ||||||||||||||||||||||||    
T  4558794 tatatgaaaataatttaactttattttatcttttattat-agaaatagcttatacataaacactta 4558730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 10722629 - 10722556
Alignment:
Q  176 cttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||| ||| | |||||||||| ||||||||| |||  || ||||||| || |||||||||||||    
T  10722629 cttatatgaaaataattttagtttattttatctttgttatataaataagattatacacaagcacttatatgata 10722556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 26215510 - 26215435
Alignment:
Q  160 tagcttatagaaacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataa 235  Q
    ||||||||  |||||  ||||| ||||||||||||||||||||||||  |||||||| | |||||||||||||||||    
T  26215510 tagcttatgaaaacatattatacgaaaatagtttaactttattttatcttttgttat-agaaatagcttatacataa 26215435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 28769409 - 28769484
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||| ||||||||||| |||| ||||||| ||||||||||  || |||||||||||||| || ||||||||||    
T  28769409 agcttataagaaaatagtttgacttaattttatagtttgttataggaa-tagcttatacataagcatttatatgata 28769484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 2595084 - 2595134
Alignment:
Q  191 tttaactttattttatgtttgttataaaaaatagcttatacataaacactta 242  Q
    |||||||||||||||| || ||||||||||| | ||||||||||||||||||    
T  2595084 tttaactttattttatctt-gttataaaaaaaaccttatacataaacactta 2595134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 34788497 - 34788572
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||| ||| ||||| |||||||||||| |||| |   ||||||||||||||| ||| || ||||||||||    
T  34788497 agcttatatggaaacagtttgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgata 34788572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 42237492 - 42237547
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagctta 228  Q
    |||||||||||||| | ||||||||||||||||  |||||||||||||| ||||||    
T  42237492 agcttatatgaaaacaatttaactttattttatcttttgttataaaaaagagctta 42237547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 2699304 - 2699274
Alignment:
Q  176 cttatatgaaaatagtttaactttattttat 206  Q
    |||||||||||||||||||||||||||||||    
T  2699304 cttatatgaaaatagtttaactttattttat 2699274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 9700118 - 9700064
Alignment:
Q  75 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    |||||| |||||| ||||||||||||||||||| |||||  || |||||||||||    
T  9700118 cataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgt 9700064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 14949983 - 14949929
Alignment:
Q  75 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    |||||| | |||| ||||| |||  ||||||||||||||||||||||||||||||    
T  14949983 cataaacatttgtgagactgtttaggagagcttatgaaaataacttatgacatgt 14949929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 26717254 - 26717182
Alignment:
Q  175 gcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||| |||||||||||| ||||||||||||  ||||||| |||| |||||||| || || |||||||||||||    
T  26717254 gcttatttgaaaatagtttgactttattttat-cttgttat-aaaattagcttattcagaagcacttatatgata 26717182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 27412851 - 27412884
Alignment:
Q  91 actatttgagagagcttatgaaaataacttatga 124  Q
    |||||||||||||||||||||||| |||||||||    
T  27412851 actatttgagagagcttatgaaaacaacttatga 27412884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 29262942 - 29263016
Alignment:
Q  172 acagcttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatga 247  Q
    |||||||||||||||||| ||| |||||||||||| || | ||||| |||||| |  ||| ||||||||||||||||    
T  29262942 acagcttatatgaaaataatttgactttattttatcttctattatagaaaataac--atatataaacacttatatga 29263016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 30191101 - 30191150
Alignment:
Q  82 acttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 131  Q
    |||||| ||||| |||| ||||||||||| ||| ||||||||||||||||    
T  30191101 acttgttagactgtttgggagagcttatggaaacaacttatgacatgttc 30191150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 3645886 - 3645961
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtttg-ttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||||||||| | ||| |||||| |||  ||||| ||| ||||||||||| || |||||||||||||    
T  3645886 agcttatatgaaaatagtttgattttgttttatattttcttatagaaa-tagcttatacacaagcacttatatgata 3645961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 6918988 - 6918956
Alignment:
Q  217 aaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||||||||||||| |||||||||||||    
T  6918988 aaaaatagcttatacataagcacttatatgata 6918956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 10923730 - 10923674
Alignment:
Q  58 ttgactttattcactgacataaatacttgtaagactatttgagagagcttatgaaaa 114  Q
    |||| |||||| | || |||||| ||||||||||| ||||||||||| |||||||||    
T  10923730 ttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaa 10923674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 11056737 - 11056812
Alignment:
Q  174 agcttatatgaaaatagtttaacttta-ttttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||||||||||||| ||||||| ||||   |||||||| | |||||||| || ||| |||||||||||||||    
T  11056737 agcttatatgaaaatagttcaactttatttttccttttgttat-agaaatagctcatgcatgaacacttatatgata 11056812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 11376825 - 11376765
Alignment:
Q  70 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 130  Q
    ||||| |||| | ||||| |||||||||| |||| |||||||||||| ||| |||||||||    
T  11376825 actgatataagttcttgtgagactatttgggagaacttatgaaaatagcttgtgacatgtt 11376765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 11952478 - 11952510
Alignment:
Q  217 aaaaatagcttatacataaacacttatatgata 249  Q
    |||||| ||||||||||||||||||||||||||    
T  11952478 aaaaatggcttatacataaacacttatatgata 11952510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 31915245 - 31915297
Alignment:
Q  74 acataaatacttgtaagactatttgagagagcttatgaaaataacttatgaca 126  Q
    |||||||||||||| ||||| ||||||| |||||||  ||| |||||||||||    
T  31915245 acataaatacttgtgagactgtttgagaaagcttatacaaacaacttatgaca 31915297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 40357903 - 40357824
Alignment:
Q  170 aaacagcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||| | |||||||||| ||| |||||||||||| ||| ||||||  ||  |||||||||||||| ||||||||||||    
T  40357903 aaacagcatttatgaaaataattttactttattttatcttttgttatatcaag-agcttatacataaatacttatatgata 40357824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 2034494 - 2034575
Alignment:
Q  159 ttagcttatagaaacagcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacactt 241  Q
    |||||||||  ||| ||||||||||||| |||||| |||||||||||| |||||| | ||||| ||||||||||||| |||||    
T  2034494 ttagcttatgaaaaaagcttatatgaaagtagtttgactttattttatctttgttgt-aaaaacagcttatacataagcactt 2034575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 32513825 - 32513752
Alignment:
Q  173 cagcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatga 247  Q
    ||||||||||| ||||||||| |||||||||||| |||||||| | ||||| ||||| |||||||||| ||||||    
T  32513825 cagcttatatggaaatagtttgactttattttatttttgttat-agaaataacttatgcataaacactaatatga 32513752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 7351678 - 7351753
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||| |||||||||||||||||| |||| |||| | |||||| |||||||||| || ||||||||||    
T  7351678 agcttatatgaaaacagtttaactttattttatagtttattat-ataaatagtttatacataagcatttatatgata 7351753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 10452430 - 10452505
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||||||||| | ||||||||||  |||||||| | ||||||||||||||||| |||| ||||||||    
T  10452430 agcttatatgaaaatagtttgattttattttatattttgttat-agaaatagcttatacataagcactgatatgata 10452505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 1669758 - 1669805
Alignment:
Q  82 acttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  1669758 acttgtaagactaattgggagagcttatgaaaacaacttatgacatgt 1669805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 20368142 - 20368189
Alignment:
Q  84 ttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 131  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||    
T  20368142 ttgtaagactatttgggagaacttatgaaaacaacttatgacatgttc 20368189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 2460104 - 2460158
Alignment:
Q  75 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    ||||| ||||||| ||||| |||||||||||||||| ||| ||||||||||||||    
T  2460104 cataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgt 2460158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 3217262 - 3217335
Alignment:
Q  176 cttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||| ||| |||||||||||| || | |||  ||||||||||||||||||| |||||||||||||    
T  3217262 cttatatgaaaataatttgactttattttatcttctctta-caaaaatagcttatacataagcacttatatgata 3217335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 1402996 - 1402964
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat 206  Q
    |||||||||||||||||||||||||||||||||    
T  1402996 agcttatatgaaaatagtttaactttattttat 1402964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 10032571 - 10032496
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgt-ttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||||||| ||||||  |||||||| |  | |||||||||||| ||||||||||||||||| ||||||||||    
T  10032571 agcttatatgaaattagtttgcctttatttcacctattgttataaaaa-tagcttatacataaacatttatatgata 10032496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 27693392 - 27693448
Alignment:
Q  75 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 131  Q
    ||||| ||||||| |||||||||||||||  ||||| ||| ||||||||||||||||    
T  27693392 cataagtacttgtgagactatttgagagaatttatggaaacaacttatgacatgttc 27693448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 32577934 - 32577993
Alignment:
Q  70 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    |||| ||||||||||||  | | | |||||||||||||||||||| ||||||||||||||    
T  32577934 actggcataaatacttgggacattgtttgagagagcttatgaaaacaacttatgacatgt 32577993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 246
Target Start/End: Original strand, 30817671 - 30817709
Alignment:
Q  208 tttgttataaaaaatagcttatacataaacacttatatg 246  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  30817671 tttgttataaaaaatagcatatacataagcacttatatg 30817709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 30863363 - 30863309
Alignment:
Q  75 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    |||||| |||||| ||||| ||||  |||||||||||||| ||||||||||||||    
T  30863363 cataaacacttgttagactctttggtagagcttatgaaaacaacttatgacatgt 30863309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 30865601 - 30865547
Alignment:
Q  74 acataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatg 128  Q
    ||||||| |||||| ||||  ||| |||||||||||| |||||||||||||||||    
T  30865601 acataaacacttgttagacagtttaagagagcttatggaaataacttatgacatg 30865547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 24332924 - 24332868
Alignment:
Q  192 ttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||||||||| ||| ||| || ||||||||||||||||| |||||||| ||||    
T  24332924 ttaactttattttatctttttta-aagaaatagcttatacataatcacttataggata 24332868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 27693507 - 27693581
Alignment:
Q  172 acagcttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatga 247  Q
    |||||||||||||||||| ||| |||||||||||| || | ||||| |||||| |  ||| ||||||||||||||||    
T  27693507 acagcttatatgaaaataatttgactttattttatcttctattatagaaaataac--atatataaacacttatatga 27693581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 27857480 - 27857423
Alignment:
Q  70 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacat 127  Q
    ||||||||| | |||||| | ||| |||| ||||||||||||||| ||||||||||||    
T  27857480 actgacatagacacttgtgaaactgtttgggagagcttatgaaaacaacttatgacat 27857423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 32917313 - 32917260
Alignment:
Q  76 ataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    ||||| |||||| ||||| |||| ||||||||||| ||| ||||||||||||||    
T  32917313 ataaacacttgtgagactgtttgggagagcttatggaaacaacttatgacatgt 32917260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 33911366 - 33911422
Alignment:
Q  189 agtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatat 245  Q
    ||||||||||||||| || ||| |||||||||| ||| ||||||||||||||||||||    
T  33911366 agtttaactttatttgatcttttgttataaaaa-tagattatacataaacacttatat 33911422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 2027479 - 2027523
Alignment:
Q  177 ttatatgaaaatagtttaactttattttat-gtttgttataaaaa 220  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||    
T  2027479 ttatatgaaaatagtttgactttattttatcttttgttataaaaa 2027523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 8010349 - 8010282
Alignment:
Q  181 atgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||| ||| || ||||||||||||  |||||||| ||| |||||||||| ||| |||||||||||||    
T  8010349 atgaaagtagattgactttattttattgttgttatagaaa-tagcttatacctaagcacttatatgata 8010282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 28660833 - 28660877
Alignment:
Q  177 ttatatgaaaatagtttaactttattttatgt-ttgttataaaaa 220  Q
    ||||||||||||| |||||||||||||||| | ||||||||||||    
T  28660833 ttatatgaaaataatttaactttattttatctattgttataaaaa 28660877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 31668474 - 31668430
Alignment:
Q  75 cataaatacttgtaagactatttgagagagcttatgaaaataact 119  Q
    |||||| |||||| |||||||| ||||||||||||||||| ||||    
T  31668474 cataaacacttgtgagactattagagagagcttatgaaaacaact 31668430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 25459696 - 25459772
Alignment:
Q  176 cttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgatacgtg 253  Q
    ||||||||||||||||||| |||||| |||| |||||||| || ||||| ||||||| || |||||| ||||||||||    
T  25459696 cttatatgaaaatagtttatctttatattatctttgttat-aacaatagtttatacaaaagcacttacatgatacgtg 25459772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 2175809 - 2175857
Alignment:
Q  82 acttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 130  Q
    |||||||||||||||||||| || ||||||||| |||||||||||||||    
T  2175809 acttgtaagactatttgagatagtttatgaaaacaacttatgacatgtt 2175857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 16790432 - 16790501
Alignment:
Q  180 tatgaaaatagtttaactttattttatgt-ttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||| ||| | |||||||||| | ||||||||||| ||||||||||||||| |||||||||||||    
T  16790432 tatgaaaataatttgattttattttatctgttgttataaaa-atagcttatacataagcacttatatgata 16790501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 25182947 - 25182992
Alignment:
Q  82 acttgtaagactatttgagagagcttatgaaaataacttatgacat 127  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||||    
T  25182947 acttgtgagactgtttgagagagcttatgaaaacaacttatgacat 25182992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 25183058 - 25183134
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttataca-taaacacttatatgata 249  Q
    |||| |||||||||||| |||||||||||| ||  |||||||| |||||||| ||||||| |||||||||||||||||    
T  25183058 agctcatatgaaaatagcttaactttatttaatcttttgttat-aaaaatagtttatacattaaacacttatatgata 25183134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 38462277 - 38462206
Alignment:
Q  178 tatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||| ||||| |||||||||||| ||| | |||| ||| ||||||||| ||||||||||||||||||    
T  38462277 tatatgaaaacagtttgactttattttatcttttggtatagaaa-tagcttataaataaacacttatatgata 38462206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 49772781 - 49772813
Alignment:
Q  217 aaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||||||||||||||||||||||    
T  49772781 aaaaatagcttatacataaacacttatatgata 49772813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 1810087 - 1810040
Alignment:
Q  82 acttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    |||||| |||||||||||||||||||| | ||| ||||||||||||||    
T  1810087 acttgtgagactatttgagagagcttacggaaacaacttatgacatgt 1810040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 32703138 - 32703063
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||| | ||| | |||||||||| |||  ||  | |||||||||||||||||||| ||||||||||    
T  32703138 agcttatatgaaaacaatttgagtttattttatcttttataatagaaatagcttatacataaacatttatatgata 32703063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 40880915 - 40880954
Alignment:
Q  89 agactatttgagagagcttatgaaaataacttatgacatg 128  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  40880915 agactgtttgagagagcttatgaaaacaacttatgacatg 40880954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 47584570 - 47584523
Alignment:
Q  72 tgacataaatacttgtaagactatttgagagagcttatgaaaataact 119  Q
    ||||||||  |||||| |||||||||||||||||||||||||| ||||    
T  47584570 tgacataagcacttgtgagactatttgagagagcttatgaaaagaact 47584523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 50016003 - 50015948
Alignment:
Q  75 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 130  Q
    |||||| |||||| ||||| ||||||||| |||||||||| ||| |||||||||||    
T  50016003 cataaacacttgtgagactgtttgagagaacttatgaaaagaacgtatgacatgtt 50015948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 21574593 - 21574551
Alignment:
Q  89 agactatttgagagagcttatgaaaataacttatgacatgttc 131  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||    
T  21574593 agactgtttgggagagcttatgaaaacaacttatgacatgttc 21574551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 22232824 - 22232751
Alignment:
Q  176 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||| ||||| ||||||||||||  |||||||| | ||||||||||||||| | || ||||||||||    
T  22232824 cttatatgaaaacagtttgactttattttatcatttgttat-ataaatagcttatacatgagcatttatatgata 22232751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 47132101 - 47132063
Alignment:
Q  85 tgtaagactatttgagagagcttatgaaaataacttatg 123  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  47132101 tgtaagactatttgagagaacttatgaaaacaacttatg 47132063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 50004787 - 50004713
Alignment:
Q  58 ttgactttattcactgacataaatacttgtaagactatttgagagagc-ttatgaaaataacttatgacatgttc 131  Q
    |||| |||||| ||||||||||  | |||||||||| |||||||| || ||||| ||| ||||||||||||||||    
T  50004787 ttgagtttatttactgacataagcaattgtaagactgtttgagagggccttatggaaacaacttatgacatgttc 50004713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 1395671 - 1395611
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacata 234  Q
    |||||||||||||||| ||| ||||||||||||  |||||||| | ||||||||||||||||    
T  1395671 agcttatatgaaaataatttgactttattttatcttttgttat-agaaatagcttatacata 1395611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 14548681 - 14548726
Alignment:
Q  82 acttgtaagactatttgagagagcttatgaaaataacttatgacat 127  Q
    |||||| ||||| |||||||||||||||||||| ||| ||||||||    
T  14548681 acttgtgagactgtttgagagagcttatgaaaacaacgtatgacat 14548726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 33965564 - 33965641
Alignment:
Q  177 ttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgatacgtg 253  Q
    ||||||||||| ||||| |||||||||||  ||| ||||||||||||| ||| |||| |||||| ||||  |||||||    
T  33965564 ttatatgaaaacagtttgactttattttaccttttgttataaaaaataacttgtacaaaaacacctatacaatacgtg 33965641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 2304224 - 2304280
Alignment:
Q  75 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 131  Q
    |||||| |||||| | |||||||||||||  ||||||||  ||||||||||||||||    
T  2304224 cataaacacttgtgaaactatttgagagaaattatgaaagcaacttatgacatgttc 2304280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 28779356 - 28779281
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgt-ttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||||||||| ||||||||| || |  |||||| ||||| |||||||||| || || ||||||||||    
T  28779356 agcttatatgaaaatagtttgactttatttcatctgatgttat-aaaaacagcttatacaaaagcaattatatgata 28779281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 37689454 - 37689509
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttat 229  Q
    |||||||||||||||| |||||||||| |||||  |||||||| |||||||||||||    
T  37689454 agcttatatgaaaataatttaactttactttatcttttgttat-aaaaatagcttat 37689509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 41028921 - 41028996
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||| |||||| || || |||||||||| | ||| |||||| ||| |||||||||||||| |||||||||||||    
T  41028921 agcttatttgaaaacagattgactttattttttcttttgttatagaaa-tagcttatacataagcacttatatgata 41028996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 42809305 - 42809242
Alignment:
Q  170 aaacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacat 233  Q
    |||||||||||||||||| | ||||||| ||||||||  |||||||| | |||||||||||||||    
T  42809305 aaacagcttatatgaaaacaatttaactatattttatcttttgttat-agaaatagcttatacat 42809242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 43116498 - 43116573
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||||||||| |||| | || ||||||| ||| |||||| ||| ||||||| |||||||||||| |||||||    
T  43116498 agcttatatgaaaattgtttgatttgattttatcttttgttatagaaa-tagcttacacataaacacttgtatgata 43116573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 50211845 - 50211805
Alignment:
Q  82 acttgtaagactatttgagagagcttatgaaaataacttat 122  Q
    |||||||||||| ||||||||| |||||||||| |||||||    
T  50211845 acttgtaagactgtttgagagaacttatgaaaacaacttat 50211805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 49060540 - 49060465
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||| |||||| ||| |||||||||||| ||| |||||| ||| ||||||||||||||| ||||||||||||    
T  49060540 agcttatataaaaataatttgactttattttattttttgttatagaaa-tagcttatacataaatacttatatgata 49060465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 3500913 - 3500974
Alignment:
Q  70 actgacataaatacttg--taagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    ||||||||||| |||||  |||| ||||||| ||||||||||| ||||||||||||||||||    
T  3500913 actgacataaaaacttgcgtaagtctatttgtgagagcttatggaaataacttatgacatgt 3500974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 22387838 - 22387904
Alignment:
Q  64 ttattcactgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 130  Q
    ||||| ||||||||||| || ||| ||||| |||| ||||||||||||||| |||||||| ||||||    
T  22387838 ttatttactgacataaacacgtgtgagactgtttgggagagcttatgaaaacaacttatggcatgtt 22387904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 31149739 - 31149705
Alignment:
Q  93 tatttgagagagcttatgaaaataacttatgacat 127  Q
    |||||||||||||||||||||||||||||||||||    
T  31149739 tatttgagagagcttatgaaaataacttatgacat 31149705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 31168031 - 31167997
Alignment:
Q  93 tatttgagagagcttatgaaaataacttatgacat 127  Q
    |||||||||||||||||||||||||||||||||||    
T  31168031 tatttgagagagcttatgaaaataacttatgacat 31167997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 40428555 - 40428483
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgttt--gttataaaaaatagcttatacataaacacttatat 245  Q
    |||||||||||||||| |||||||||||||||| |||  |||||| ||||| |||||| ||||| |||||||||    
T  40428555 agcttatatgaaaataatttaactttattttattttttcgttatagaaaat-gcttatccataatcacttatat 40428483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 45593791 - 45593864
Alignment:
Q  176 cttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||| ||||| ||||||||||||| |||||||  | ||||||||||||||||| || ||||||||||    
T  45593791 cttatatgaaaacagtttgactttattttatgttttgtta-cagaaatagcttatacataagcatttatatgata 45593864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 36370669 - 36370595
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacat-aaacacttatatgata 249  Q
    ||||||| |||||| |||||||||| ||||||| || |||||| |||||||||||||||| |||||| |||||||||    
T  36370669 agcttatgtgaaaacagtttaactt-attttatctt-gttatagaaaatagcttatacataaaacacatatatgata 36370595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 44151424 - 44151468
Alignment:
Q  70 actgacataaatacttgtaagactatttgagagagcttatgaaaa 114  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||||    
T  44151424 actgacataagtacttgtgagattatttgagagagcttatgaaaa 44151468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 45078265 - 45078218
Alignment:
Q  201 ttttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||    
T  45078265 ttttatttttgttataaaaa-tagcttatacataagcacttatatgata 45078218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 47004082 - 47004012
Alignment:
Q  179 atatgaaaatagtttaactttattttatgt-ttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||| |||||||||| |||||||||||| | |||||||| ||| ||||||| | ||||||||||||||||||    
T  47004082 atataaaaatagtttgactttattttatctattgttatagaaa-tagcttacatataaacacttatatgata 47004012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 249
Target Start/End: Complemental strand, 27389338 - 27389308
Alignment:
Q  219 aaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||||||||||||||||||||    
T  27389338 aaatagcttatacataaacacttatatgata 27389308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 44808266 - 44808221
Alignment:
Q  84 ttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    |||| ||||| ||||| ||| |||||||||||||||||||||||||    
T  44808266 ttgtcagactgtttgatagaccttatgaaaataacttatgacatgt 44808221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 8094416 - 8094368
Alignment:
Q  82 acttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 130  Q
    |||||| |||||||||||||||  ||||||||| | |||||||||||||    
T  8094416 acttgtgagactatttgagagattttatgaaaacagcttatgacatgtt 8094368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 22759186 - 22759111
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||| | |||  ||||||||||| ||| |||||| ||| ||||||| |||||||| |||||||||||    
T  22759186 agcttatatgaaaacaattttcctttattttatcttttgttatacaaa-tagcttaaacataaacgcttatatgata 22759111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 26935620 - 26935695
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||| ||||||||| | |||||| |||||||||  |||||||||||| |||||||| ||| || |||||||||||||    
T  26935620 agctcatatgaaaacaatttaaccttattttatcatttgttataaaa-atagcttacacaaaagcacttatatgata 26935695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 27481364 - 27481435
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatat 245  Q
    |||||||||| ||| ||||| ||||  ||||||  ||||||||| ||| ||||||||||||||||||||||||    
T  27481364 agcttatatggaaacagtttgacttcgttttatcctttgttatagaaa-tagcttatacataaacacttatat 27481435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 36538025 - 36537969
Alignment:
Q  75 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 131  Q
    |||||| |||||| ||| | ||||||||| |||||| ||| ||||||||||||||||    
T  36538025 cataaacacttgtgagattgtttgagagaacttatggaaacaacttatgacatgttc 36537969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 39551618 - 39551693
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||| ||||| |||||| | ||| ||| |||||| ||| |||||||||| |||| ||||||||||||    
T  39551618 agcttatatgaaaacagttttactttagtatatcttttgttatagaaa-tagcttatacttaaatacttatatgata 39551693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 40689056 - 40689088
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat 206  Q
    |||||||||||||||| ||||||||||||||||    
T  40689056 agcttatatgaaaataatttaactttattttat 40689088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 28581988 - 28582054
Alignment:
Q  182 tgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||| |||||||||||| ||| |  |||||||||| |||||||||||||||| |||||||    
T  28581988 tgaaaatagtttgactttattttatcttt-tgctaaaaaatagtttatacataaacacttctatgata 28582054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 18628501 - 18628555
Alignment:
Q  70 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatga 124  Q
    ||||||||||| |||||| ||||| |||| ||||||||||||||| |||||||||    
T  18628501 actgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 27123305 - 27123359
Alignment:
Q  75 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    ||||| ||||||| ||||| |||||||||||||||| ||| ||||||||||||||    
T  27123305 cataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgt 27123359  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 2996693 - 2996636
Alignment:
Q  72 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    ||||||||  |||| | ||||| |||||||||||||||||||| ||||||||||||||    
T  2996693 tgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgt 2996636  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 437504 - 437564
Alignment:
Q  176 cttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataa 235  Q
    |||||||||| | | |||||||||||||||| ||| | |||||||||||||||||||||||    
T  437504 cttatatgaacacaatttaactttattttatcttttgctataaaaaatagcttatacataa 437564  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 249
Target Start/End: Original strand, 22684583 - 22684661
Alignment:
Q  171 aacagcttatatgaaaatagtttaactttatttta-tgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||||||||||| | ||| |||||||||||  ||||||||| | |||||||||||||| || || ||||||||||    
T  22684583 aacagcttatatgaaaacaatttgactttattttaccgtttgttat-agaaatagcttatacagaagcatttatatgata 22684661  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 27725316 - 27725277
Alignment:
Q  90 gactatttgagagagcttatgaaaataacttatgacatgt 129  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  27725316 gactgtttgagagagcttatggaaataacttatgacatgt 27725277  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 33534119 - 33534174
Alignment:
Q  72 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacat 127  Q
    |||||||| ||||||| ||| |||||||||||||||||||||| || || ||||||    
T  33534119 tgacataagtacttgtgagagtatttgagagagcttatgaaaacaaattgtgacat 33534174  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 42321952 - 42322018
Alignment:
Q  177 ttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttat 243  Q
    ||||||||||| | ||| ||||||||||||  |||||||||||| ||||||||| |||||||||||||    
T  42321952 ttatatgaaaacaatttgactttattttatcatttgttataaaa-atagcttattcataaacacttat 42322018  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 44319949 - 44319875
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||| ||||  |||||||||||| ||| |||| | |||||| |||||||| | |||||||||||||    
T  44319949 agcttatatgaaaacagttcgactttattttatcttttttat-agaaatagtttatacatgagcacttatatgata 44319875  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 54325107 - 54325182
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||| ||||| |||||||||||| |||  ||  | |||||| ||||||| || |||||||||||||    
T  54325107 agcttatatgaaaacagtttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatgata 54325182  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 55437356 - 55437429
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||||| ||| ||||||||||||  ||||||| | |||||||||||| |||| | |||||||||||    
T  55437356 agcttatatgaaaataatttgactttattttat-attgttat-agaaatagcttatagataatcgcttatatgata 55437429  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 24193583 - 24193510
Alignment:
Q  176 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||||||||||| | ||||||  |||||| | ||||||| |||||||||||  ||||||||||||    
T  24193583 cttatatgaaaatagtttaactctgttttatattttgttgt-aaaaataacttatacataagtacttatatgata 24193510  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 32920491 - 32920543
Alignment:
Q  195 actttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||| || ||||||||| ||||||||| |||||||||||||||||||    
T  32920491 actttattttatctt-gttataaaa-atagcttatccataaacacttatatgata 32920543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 47970310 - 47970245
Alignment:
Q  182 tgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatga 247  Q
    |||||||||||| |||| ||||||| ||| |||||| ||| |||||||||||||| |||||||||||    
T  47970310 tgaaaatagtttgacttcattttatcttttgttatagaaa-tagcttatacataagcacttatatga 47970245  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 1554968 - 1555017
Alignment:
Q  82 acttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 131  Q
    ||||| |||||| |||||||||  ||||||||||| ||||||||||||||    
T  1554968 acttgcaagactgtttgagagaatttatgaaaatagcttatgacatgttc 1555017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 4071882 - 4071811
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatg 246  Q
    |||||||||||||||| ||| ||||||||||||  |||||||| | |||||| ||||| |||||||||||||||    
T  4071882 agcttatatgaaaataatttgactttattttatcttttgttat-agaaatag-ttatatataaacacttatatg 4071811  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 5219573 - 5219602
Alignment:
Q  177 ttatatgaaaatagtttaactttattttat 206  Q
    ||||||||||||||||||||||||||||||    
T  5219573 ttatatgaaaatagtttaactttattttat 5219602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 23819087 - 23819015
Alignment:
Q  176 cttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||| ||||| |||  ||||||| ||||||||  ||| || ||||||||||||||||| |||||||    
T  23819087 cttatatgaaaacagtttgactacattttatatttgttatggaaa-taacttatacataaacacttgtatgata 23819015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 36734890 - 36734818
Alignment:
Q  177 ttatatgaaaatagtttaactttatttta-tgtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    ||||||||||||||||| |||||||||||   |||||||| | ||| || |||||||||| |||||||||||||    
T  36734890 ttatatgaaaatagtttgactttattttaccttttgttat-agaaagagattatacataagcacttatatgata 36734818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 52428766 - 52428733
Alignment:
Q  91 actatttgagagagcttatgaaaataacttatga 124  Q
    |||||||||||||||||||||||| |||||||||    
T  52428766 actatttgagagagcttatgaaaacaacttatga 52428733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 52645655 - 52645622
Alignment:
Q  219 aaatagcttatacataaacacttatatgatacgt 252  Q
    |||||||| |||||||||||||||||||||||||    
T  52645655 aaatagctcatacataaacacttatatgatacgt 52645622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 54414950 - 54414874
Alignment:
Q  176 cttatatgaaaatagtttaactttattttatgtttgtt-ataaaaa--atagcttatacataaacacttatatgata 249  Q
    |||||| |||||||| || |||||||||| | ||| || |||||||  ||||||||||||||| |||||||||||||    
T  54414950 cttataggaaaatagattgactttattttctctttctttataaaaataatagcttatacataagcacttatatgata 54414874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 54986400 - 54986348
Alignment:
Q  195 actttattttatgtttgttataaaaaatagcttatacataaacacttatatgat 248  Q
    ||||||| |||| ||||||||| ||| ||||||||||||||| |||||||||||    
T  54986400 actttatcttatttttgttatagaaa-tagcttatacataaaaacttatatgat 54986348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 8422928 - 8422988
Alignment:
Q  195 actttattttatgtttgttataaaaaatagcttatacataaacacttatatgatacgtgat 255  Q
    |||||||||||| ||| ||   ||||||||||||||||||| ||| |||||||||| ||||    
T  8422928 actttattttatctttttttataaaaatagcttatacataagcacatatatgatacatgat 8422988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 12162947 - 12162911
Alignment:
Q  180 tatgaaaatagtttaactttattttatgtttgttata 216  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  12162947 tatgaaaataatttgactttattttatgtttgttata 12162911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 21157768 - 21157693
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||| ||||||| ||||| |||||| |||||  |||||||| |||| ||||| |||||||| |||||||||||||    
T  21157768 agcttacatgaaaacagtttgactttagtttatactttgttatcaaaa-tagctgatacataagcacttatatgata 21157693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 32724118 - 32724046
Alignment:
Q  175 gcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatga 247  Q
    ||||||||||||||||||| |||||||||||| |||  ||  | |||||| ||| |||||| |||| ||||||    
T  32724118 gcttatatgaaaatagtttgactttattttatcttttgtaatagaaatagattagacataagcactgatatga 32724046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 49219139 - 49219064
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 249  Q
    |||||||||||||||| ||| ||||||||||||  |||||||| | ||||| ||||||| ||| |||| ||||||||    
T  49219139 agcttatatgaaaataatttgactttattttatattttgttat-agaaataacttatacctaaccactcatatgata 49219064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 56007789 - 56007734
Alignment:
Q  82 acttgtaagactatttgagagagcttatgaaaataacttatgacatgttcgattgtc 138  Q
    |||||||||||| |||||||||||| ||  || |||||||||||||| |||||||||    
T  56007789 acttgtaagactgtttgagagagctaatacaagtaacttatgacatg-tcgattgtc 56007734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 6568 - 6600
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat 206  Q
    |||||||||||||||||||| ||||||||||||    
T  6568 agcttatatgaaaatagtttgactttattttat 6600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 13588 - 13620
Alignment:
Q  174 agcttatatgaaaatagtttaactttattttat 206  Q
    |||||||||||||||||||| ||||||||||||    
T  13588 agcttatatgaaaatagtttgactttattttat 13620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 21334 - 21409
Alignment:
Q  160 tagcttatagaaacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataa 235  Q
    ||||||||  |||||||||||| ||||| | ||||||||||||||||  |||  ||| |||||||||||||||||||    
T  21334 tagcttatgaaaacagcttatacgaaaacaatttaactttattttatcttttcctat-aaaaatagcttatacataa 21409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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