View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16722_low_3 (Length: 649)
Name: NF16722_low_3
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16722_low_3 |
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| [»] scaffold0722 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 16 - 633
Target Start/End: Complemental strand, 35883001 - 35882389
Alignment:
| Q |
16 |
aaccacgttatggaacagagaataggacattagaaaattaaaaacccgtgaaagctagccattaatgaatgatagttgcattgcagtaaggtaactactc |
115 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
35883001 |
aaccatgttatggaacagagaataggacattagaaaattaaaaacccgtgaaagc----cattaatgaatgatagttgca-----gtaaggtaactactc |
35882911 |
T |
|
| Q |
116 |
gaaagaaatcaaaattcaaaacattgaatcannnnnnnnctgtacggtacacac----atacctgcaatacagtaaccagaaagaggcaacaagtttgga |
211 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882910 |
gaaagaaatcaaaattcaaaacattgaatcattttttttctgtacggtacacacatacatacctgcaatacagtaaccagaaagaggcaacaagtttgga |
35882811 |
T |
|
| Q |
212 |
tgtttcagtttcgataagtcaacaaacatagccacagagtcatcataatcaacgtctctgacatgttcaagaaccttgattgccacgtgtatttcaccgg |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882810 |
tgtttcagtttcgataagtcaacaaacatagccacagagtcatcataatcaacgtctctgacatgttcaagaaccttgattgccacgtgtatttcaccgg |
35882711 |
T |
|
| Q |
312 |
gtaacacggcccaatacactggtccacaccttccttctgctagctgtgactctttcccgaaatgtgacgtggcaatgatgagatctttggatgtgaagtt |
411 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35882710 |
gcaacacggcccaatacactggtccacaccttccttctgctagctgtgactctttcccgaaatgtgacgtggcaatgatgagatctttgaatgtgaagtt |
35882611 |
T |
|
| Q |
412 |
catcaatggtttctcaaacatcaccactgctgcagatgttggttctttcacatctgcaacccatgttgttcctgattctgtttcaaactcaaatggtcct |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882610 |
catcaatggtttctcaaacatcaccactgctgcagatgttggttctttcacatctgcaacccatgttgttcctgattctgtttcaaactcaaatggtcct |
35882511 |
T |
|
| Q |
512 |
gttttctctacctttgtgtttgttttgttcatcataactggtaatgagatagcccatttcttcatcttggaacgttgtttcatccttttgtttataataa |
611 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35882510 |
gttttctctacctttgtgtttgttttgttcatcataactggtaatgagatagcccatttcttcatcttggaacgttgtttcatctttttgtttataataa |
35882411 |
T |
|
| Q |
612 |
agatgacccatatggaaataat |
633 |
Q |
| |
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|||||||||| ||||||||||| |
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| T |
35882410 |
agatgacccaaatggaaataat |
35882389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 16 - 633
Target Start/End: Complemental strand, 24457202 - 24456590
Alignment:
| Q |
16 |
aaccacgttatggaacagagaataggacattagaaaattaaaaacccgtgaaagctagccattaatgaatgatagttgcattgcagtaaggtaactactc |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
24457202 |
aaccatgttatggaacagagaataggacattagaaaattaaaaacccgtgaaagc----cattaatgaatgatagttgca-----gtaaggtaactactc |
24457112 |
T |
|
| Q |
116 |
gaaagaaatcaaaattcaaaacattgaatcannnnnnnnctgtacggtacacac----atacctgcaatacagtaaccagaaagaggcaacaagtttgga |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24457111 |
gaaagaaatcaaaattcaaaacattgaatcattttttttctgtacggtacacacatacatacctgcaatacagtaaccagaaagaggcaacaagtttgga |
24457012 |
T |
|
| Q |
212 |
tgtttcagtttcgataagtcaacaaacatagccacagagtcatcataatcaacgtctctgacatgttcaagaaccttgattgccacgtgtatttcaccgg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24457011 |
tgtttcagtttcgataagtcaacaaacatagccacagagtcatcataatcaacgtctctgacatgttcaagaaccttgattgccacgtgtatttcaccgg |
24456912 |
T |
|
| Q |
312 |
gtaacacggcccaatacactggtccacaccttccttctgctagctgtgactctttcccgaaatgtgacgtggcaatgatgagatctttggatgtgaagtt |
411 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24456911 |
gcaacacggcccaatacactggtccacaccttccttctgctagctgtgactctttcccgaaatgtgacgtggcaatgatgagatctttgaatgtgaagtt |
24456812 |
T |
|
| Q |
412 |
catcaatggtttctcaaacatcaccactgctgcagatgttggttctttcacatctgcaacccatgttgttcctgattctgtttcaaactcaaatggtcct |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456811 |
catcaatggtttctcaaacatcaccactgctgcagatgttggttctttcacatctgcaacccatgttgttcctgattctgtttcaaactcaaatggtcct |
24456712 |
T |
|
| Q |
512 |
gttttctctacctttgtgtttgttttgttcatcataactggtaatgagatagcccatttcttcatcttggaacgttgtttcatccttttgtttataataa |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24456711 |
gttttctctacctttgtgtttgttttgttcatcataactggtaatgagatagcccatttcttcatcttggaacgttgtttcatctttttgtttataataa |
24456612 |
T |
|
| Q |
612 |
agatgacccatatggaaataat |
633 |
Q |
| |
|
|||||||||| ||||||||||| |
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|
| T |
24456611 |
agatgacccaaatggaaataat |
24456590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0722 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 171 - 519
Target Start/End: Original strand, 2132 - 2481
Alignment:
| Q |
171 |
tacctgcaatacagtaaccagaaagaggcaacaagtttggatgtttcagtttcgataagtcaa-caaacatagccacagagtcatcataatcaacgtctc |
269 |
Q |
| |
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||||||| || |||||||||||||| ||||| | || |||||||| || || || ||||||| |||| || | |||| ||||||| |||||| |||| |
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| T |
2132 |
tacctgcgatgcagtaaccagaaagtggcaaaagattgggatgtttaagcttagacaagtcaaacaaaagtatcaacagcatcatcatgatcaacctctc |
2231 |
T |
|
| Q |
270 |
tgacatgttcaagaaccttgattgccacgtgtatttcaccgggtaacacggcccaatacactggtccacaccttccttctgctagctgtgactctttccc |
369 |
Q |
| |
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| ||| |||||||||||| ||||||||||||| || || ||||| || || | ||| || || ||||| || ||||| |||||||| || |||||||| |
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|
| T |
2232 |
tagcattttcaagaaccttaattgccacgtgtaactccccaggtaaaacagcacgataaacgggcccacatctaccttcagctagctgagaatctttccc |
2331 |
T |
|
| Q |
370 |
gaaatgtgacgtggcaatgatgagatctttggatgtgaagttcatcaatggtttctcaaacatcaccactgctgcagatgttggttctttcacatctgca |
469 |
Q |
| |
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|||| |||||||||| | || ||||| || | | | ||||||||| |||||||||||||| || |||| ||| || ||||||||||| | ||| || |
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| T |
2332 |
aaaatatgacgtggcattcataagatccatgaaactaatgttcatcaaaggtttctcaaacatgacaactgatgctgaagttggttcttttagatcagct |
2431 |
T |
|
| Q |
470 |
acccatgttgttcctgattctgtttcaaactcaaatggtcctgttttctc |
519 |
Q |
| |
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||||| | |||||| |||||||| ||||| |||| ||||| | |||||| |
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|
| T |
2432 |
acccacgatgttccagattctgtctcaaatgcaaacggtccagatttctc |
2481 |
T |
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