View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16722_low_5 (Length: 586)
Name: NF16722_low_5
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16722_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 15510843 - 15510272
Alignment:
| Q |
1 |
ttattatccccggccttcatggacgaatttccaacattaactggattctttcctttgttaataataacaccagattcttctgtatttgcatttcccgaat |
100 |
Q |
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| T |
15510843 |
ttattatccccggccttcatggacgaatttccaacattagctggattctttcctttgttaataataacaccagattcttctgtattcgcatttcccgaat |
15510744 |
T |
|
| Q |
101 |
ggacaaccttctgtggacctgaaataataagtaaaatatgttgcttatcagttattttgctctctaaatgaatatgcgagattctattaccatagtttat |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15510743 |
ggacaaccttctgtggacctgaaataataattaaaatatgttgcttatcagttattttgctctctaaatgaatatgcgagattctattactatagtttat |
15510644 |
T |
|
| Q |
201 |
aaatatatcgaaaatattataaagatatctagaatgtgtcttctatttagtaatttcaaggactaaactaactatcaaaagacacacttgagaaagaaat |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15510643 |
aaatatattgaaaatattataaagatatctagaatgtgtcttctgtttagtaatttcaaggactaaactaactaacaaaagacacacttgagaaagaaat |
15510544 |
T |
|
| Q |
301 |
gaactaaggaaatacacattccaacatcaaaccaactaacgaaaacacatatggaaatatgttttgtaattacgatactttcaggaaacataaaaaacat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15510543 |
gaactaaggaaatacacattccaacatcaaaccaactaacgaaaacacatatggaaatatgttttgtaattacgatactttcaggaaacataaaaaacat |
15510444 |
T |
|
| Q |
401 |
gaacatatataaacatacctccagaataatcatttgaggttaatacgagcaaaggcccgtcatcttttttaactttactacttttagcctcgcgataaca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15510443 |
gaacatatataaacatacctccagaataatcatttgaggttaatacgagcaaaggcccgtcatcttttttaactttactacttttagcctcgcgataaca |
15510344 |
T |
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| Q |
501 |
aagcgcaaatgctatcaagattatgattcctgatatacatgcagccaaaataattgcttccttgcttctgtg |
572 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15510343 |
aagcgcaaatgctatcaagattatgattcctgatatacatgcagccaaaataattgcttccttgcttctgtg |
15510272 |
T |
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