View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16722_low_7 (Length: 525)
Name: NF16722_low_7
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16722_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Original strand, 38060606 - 38061113
Alignment:
| Q |
1 |
attagaaaaagggagaaagttttagagagttttgtgaaggagaaatagaatgcacagttatattcaatgaatcactaagttgtgattttcttattcacat |
100 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||| |||| |
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| T |
38060606 |
attagaaaaagggagaaaattttagagagttttatgaaggagaaataggatgcacggtcatattcaatgaatcactaagttgtaattttcttatcgacat |
38060705 |
T |
|
| Q |
101 |
catcaatttatacaacacttgaaagagctataattgctcaagtgtataacagaaataaaacactaacaaactagttgttataacagaaaactaactctac |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38060706 |
catcaatttattcaacacttgaaagagctataattgctcaagtacataacagaaataaaacacgaacaaactagttgttataacagaaaactaactctat |
38060805 |
T |
|
| Q |
201 |
ctacacagttacttgcactacaagcaaactattattattgactaatttgaattaaactcaccacataaaagagaaataacaaagcatattacattaatct |
300 |
Q |
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| |||||||||||||| ||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
38060806 |
cgacacagttacttgcgctacaagaaaactattattcttaactaatttgaattaaactcaccacataaaagagaaataacgaagcatattacattactct |
38060905 |
T |
|
| Q |
301 |
attatgaacttagatgcttcaaggaattctatttgtgtcccttggacaaatgtgaaggtatactttgttcatttctgaagaagtttagaggatcaacttt |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38060906 |
attatgaacttagatgcttcaaggaattctatctgtgtcccttggacaaatgtgaaggtatactttgttcatttctgaagaagtttagaggatcaacttt |
38061005 |
T |
|
| Q |
401 |
ggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttataacttgtgtatccattaatgttattcacc |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||||| |
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| T |
38061006 |
ggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttgtagcttgtgtatccattgttattattcacc |
38061105 |
T |
|
| Q |
501 |
ccaatatc |
508 |
Q |
| |
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|||||||| |
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| T |
38061106 |
ccaatatc |
38061113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 320 - 508
Target Start/End: Complemental strand, 38073863 - 38073675
Alignment:
| Q |
320 |
caaggaattctatttgtgtcccttggacaaatgtgaaggtatactttgttcatttctgaagaagtttagaggatcaactttggtcttcacttttaccaat |
419 |
Q |
| |
|
|||| ||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
38073863 |
caagaaattctatttgcgtcccttggacacatgagaaggtatactttgttcatttctgaagaagtttagaggatcaacttttgtcttcacttttgccaat |
38073764 |
T |
|
| Q |
420 |
cttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttataacttgtgtatccattaatgttattcaccccaatatc |
508 |
Q |
| |
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| T |
38073763 |
cttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttgtagcttgtgtatccattaatgttattcaccccaatatc |
38073675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 265 - 508
Target Start/End: Complemental strand, 38059584 - 38059341
Alignment:
| Q |
265 |
ataaaagagaaataacaaagcatattacattaatctattatgaacttagatgcttcaaggaattctatttgtgtcccttggacaaatgtga--aggtata |
362 |
Q |
| |
|
|||||||| |||||| |||||||||| ||||| |||||||||| |||| |||| |||||| |||| || ||||||||| ||| ||| || ||||||| |
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| T |
38059584 |
ataaaagaaaaataaaaaagcatattgcattattctattatgaccttatctgctacaaggatttct--ttatgtcccttgaacacatgagagaaggtata |
38059487 |
T |
|
| Q |
363 |
ctttgttcatttctgaagaagtttagaggatcaactttggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacaccccaaatactag |
462 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| ||||| |
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| T |
38059486 |
ctctgttcatttctgaagaagtttagaggatcaactttagtcttcacttttatcaatcttttgaagttgttcttaaagtatttaacaccccaaacactag |
38059387 |
T |
|
| Q |
463 |
cttgcttataacttgtgtatccattaatgttattcaccccaatatc |
508 |
Q |
| |
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||||||| || ||||||||||||||||| ||||||||||||||||| |
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|
| T |
38059386 |
cttgcttgtagcttgtgtatccattaatattattcaccccaatatc |
38059341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 330 - 508
Target Start/End: Complemental strand, 38082935 - 38082757
Alignment:
| Q |
330 |
tatttgtgtcccttggacaaatgtgaaggtatactttgttcatttctgaagaagtttagaggatcaactttggtcttcacttttaccaatcttttgaagt |
429 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| | |
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| T |
38082935 |
tatttgtgtcccttggacacaagagaaggtatactttgttcatttctgaagaagtttagaggatcaactttggtcttcacatttgccaatcttctgaaat |
38082836 |
T |
|
| Q |
430 |
tgttcttgaagtacttaacaccccaaatactagcttgcttataacttgtgtatccattaatgttattcaccccaatatc |
508 |
Q |
| |
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||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||| |||||||||||| |||||||| |
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| T |
38082835 |
tgttcttgaagtatttaacaccccagatactagcttgcttgtagcttgtgtatccatcaatgttattcacaccaatatc |
38082757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 328 - 508
Target Start/End: Complemental strand, 38087365 - 38087185
Alignment:
| Q |
328 |
tctatttgtgtcccttggacaaatgtgaaggtatactttgttcatttctgaagaagtttagaggatcaactttggtcttcacttttaccaatcttttgaa |
427 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |||| |||||||| |
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| T |
38087365 |
tctatttgcgtcccttggacacatgagaaggtatactttgttcatttctgaagaaatttagaggatcaactttagtcttaacttttgccaaccttttgaa |
38087266 |
T |
|
| Q |
428 |
gttgttcttgaagtacttaacaccccaaatactagcttgcttataacttgtgtatccattaatgttattcaccccaatatc |
508 |
Q |
| |
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||| || ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||| |
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|
| T |
38087265 |
gttatttttgaagtacttaacaccccaaatactagcttccttatagcttgtgtacccattaatgttattcacaccaatatc |
38087185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 354 - 505
Target Start/End: Complemental strand, 37955166 - 37955015
Alignment:
| Q |
354 |
gaaggtatactttgttcatttctgaagaagtttagaggatcaactttggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacacccc |
453 |
Q |
| |
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||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
37955166 |
gaaggtatactctgttcacttctgaagaagtttagaggatcaactttggtcttcacttttgccaatcttttgaagttattcttgaagtacttaacacccc |
37955067 |
T |
|
| Q |
454 |
aaatactagcttgcttataacttgtgtatccattaatgttattcaccccaat |
505 |
Q |
| |
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| || ||||||| |||||| |||||||||||||| | |||||||||||||| |
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|
| T |
37955066 |
atatgctagctttcttatagcttgtgtatccattgttattattcaccccaat |
37955015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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