View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16722_low_9 (Length: 496)

Name: NF16722_low_9
Description: NF16722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16722_low_9
NF16722_low_9
[»] chr3 (3 HSPs)
chr3 (209-482)||(45598290-45598565)
chr3 (90-172)||(45598597-45598679)
chr3 (1-49)||(45598720-45598768)
[»] chr2 (1 HSPs)
chr2 (441-478)||(19398270-19398307)
[»] chr8 (1 HSPs)
chr8 (441-478)||(42794473-42794510)
[»] chr4 (1 HSPs)
chr4 (441-478)||(13510306-13510343)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 209 - 482
Target Start/End: Complemental strand, 45598565 - 45598290
Alignment:
Q  209 cccgaacctagtacctggttttgttctttttctgttatgtcannnnnnnn--acttataatgtaatttatttatgattgttcagtagggagaaagagcat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45598565 cccgaacctagtacctggttttgttctttttctgttatgtcattttttttttacttataatgtaatttatttatgattgtttagtagggagaaagagcat 45598466  T
Q  307 aatcaacttaggtgaattcagtgttttaccaaaaggatcaatgcagaaacgcagaaaagtttcattggccattctaataaggagattcctcggtgcaatc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45598465 aatcaacttaggtgaattcagtgttttaccaaaaggatcaatgcagaaacgcagaaaagtttcattggccattctaataaggagattcctcggtgcaatc 45598366  T
Q  407 attctttcaataaccattacttgtttcttctttgttcatgtgcacgtatcaacttctccaactgatcctaataact 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45598365 attctttcaataaccattacttgtttcttctttgttcatgtgcacgtatcaacttctccaactgatcctaataact 45598290  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 45598679 - 45598597
Alignment:
Q  90 tcatcgtttcatttaaatactcatcatcatcctcgttccaaacatgagcactccgagagtccgaggttcatgttctttttctg 172  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45598679 tcattgtttcatttaaatactcatcatcatcctcgttccaaacatgagcactccgagagtccgaggttcatgttctttttctg 45598597  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45598768 - 45598720
Alignment:
Q  1 atatataaagaaaccgtccacatcaaggtggcaatagcacataacattc 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45598768 atatataaagaaaccgtccacatcaaggtggcaatagcacataacattc 45598720  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 478
Target Start/End: Complemental strand, 19398307 - 19398270
Alignment:
Q  441 ttcatgtgcacgtatcaacttctccaactgatcctaat 478  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19398307 ttcatgtgcacgtatcaacttctccaactgatcctaat 19398270  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 478
Target Start/End: Complemental strand, 42794510 - 42794473
Alignment:
Q  441 ttcatgtgcacgtatcaacttctccaactgatcctaat 478  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42794510 ttcatgtgcacatatcaacttctccaactgatcctaat 42794473  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 478
Target Start/End: Complemental strand, 13510343 - 13510306
Alignment:
Q  441 ttcatgtgcacgtatcaacttctccaactgatcctaat 478  Q
    |||||||||||||||||||||||||||| |||||||||    
T  13510343 ttcatgtgcacgtatcaacttctccaaccgatcctaat 13510306  T

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