View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16723_high_2 (Length: 349)
Name: NF16723_high_2
Description: NF16723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16723_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 3344165 - 3343825
Alignment:
| Q |
1 |
tcatcatcatccactacaccattgaagtttctgctgttgtctgaagcttttagcatannnnnnnctaccaaattgtcgtatnnnnnnnggccaaaaggca |
100 |
Q |
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| T |
3344165 |
tcatcttcatccactacaccattgaagattctgctgttgtctgaagcttttagcatatttttttctaccaaattgtcgtataaaaaaaggccaaaaggca |
3344066 |
T |
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| Q |
101 |
agaacaatagaaccccagaaactgtaattatgcattctgcatgtaaatcaaatccctnnnnnnnnnnnnnnttaaatcatccccaaaaatcactgcataa |
200 |
Q |
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| T |
3344065 |
agaacaatagaaccccagaaactataattatgcattctgcatgcaaatcaaatccctaaaaagaaaaaaaattaaatcatccccaaaaatcactgcataa |
3343966 |
T |
|
| Q |
201 |
gcataaacaatagaaccccataaattgtagttcaaggttcccctcttcttctgccatcccgtcgatgagcagtctcacgagtgatttgcccatttcctta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||||| |||||||||||||||||||||| |
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| T |
3343965 |
acataaacaatagaaccccataaattgtagttcaaggtttccctcttcttcttccaactcgtcgatgagcagtctcatgagtgatttgcccatttcctta |
3343866 |
T |
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| Q |
301 |
gaatggaaatagacacacaatgatagagacacacctatgct |
341 |
Q |
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| T |
3343865 |
gaatggaaatagacacacaatgatagagacacacctatgct |
3343825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 91 - 341
Target Start/End: Complemental strand, 47527758 - 47527504
Alignment:
| Q |
91 |
ccaaaaggcaagaacaatagaaccccagaaactgtaattatgcattctgcatgtaaatcaaatccctnnnnnnnnnnnnnnttaaatcatccccaaaaat |
190 |
Q |
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| T |
47527758 |
ccaaaaggcaataacaatagaactccagaaatttcaattatgcattctgcgtgcacatcaaatccctaaaaacagaaaa--ttaaatcatccccaaaaat |
47527661 |
T |
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| Q |
191 |
cactgcataagc-------ataaacaatagaaccccataaattgtagttcaaggttcccctcttcttctgccatcccgtcgatgagcagtctcacgagtg |
283 |
Q |
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| T |
47527660 |
cattgcataaacgtaagcaataaacaatagaatccaa-aaattgtaattcaaggttttcctcttgttcttccaacccgtcgatgagcagtctcacgagtg |
47527562 |
T |
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| Q |
284 |
atttgcccatttccttagaatggaaatagacacacaatgatagagacacacctatgct |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
47527561 |
atttgcccatttccttagaatggaaatagacacacaatgaaagagacacgcctatgct |
47527504 |
T |
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