View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16723_low_1 (Length: 601)

Name: NF16723_low_1
Description: NF16723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16723_low_1
NF16723_low_1
[»] chr4 (2 HSPs)
chr4 (18-410)||(48280227-48280619)
chr4 (456-595)||(48280665-48280804)
[»] chr3 (1 HSPs)
chr3 (57-210)||(14336666-14336819)


Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 48280227 - 48280619
Alignment:
Q  18 ccatgtgggcgccagaggaagaaaacattggaagcaacgttttccaatcacaatatgaaaaggaaagttttggacatctttgttatgtaaacatgatgga 117  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48280227 ccatgtgggcgccagaggaagaaaacattggaagcgacgttttccaatcacaatatgaaaaggaaaattttggacatctttgttatgtaaacatgatgga 48280326  T
Q  118 gatactatttttgtgttcaagattttggaagattatttatagaacaaagcaacnnnnnnnagctagaacaatgcaagcattagttggtggatttggttta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  48280327 gatactatttttgtgttcaagattttggaagattatttatagaacaaagcaactttttttagctagaacaatgcaagcattagttggtggatttggttta 48280426  T
Q  218 gcaagtgtttatataaaagtaagaaaagatgaagacggaattgcagaaaggttaggtctgtttgcatttagtctcagttttctcttgtcttcaacagttg 317  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48280427 gcaagtgtttatataaaggtaagaaaagatgaagacggaattgcagaaaggttaggtctgtttgcatttagtctcagttttctcttgtcttcaacagttg 48280526  T
Q  318 aagcacttccaatatatcttcaagagagaactgttctaatgaaagaagcatcaagaggagcttacagaatttcttcttacttgatagccaaca 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48280527 aagcacttccaatatatcttcaagagagaactgttctaatgaaagaagcatcaagaggagcttacagaatttcttcttacttgatagccaaca 48280619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 456 - 595
Target Start/End: Original strand, 48280665 - 48280804
Alignment:
Q  456 cagttcctgtttattggattgttggactcaatccttcactcactgccttcactttcttcacttttgttgtttggctcattgtgctgatggcaagttcttt 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48280665 cagttcctgtttattggattgttggactcaatccttcactcactgccttcactttcttcacttttgttgtttggctcattgtgctgatggcaagttcttt 48280764  T
Q  556 agttctctttttgagttctgtgtctcctgatttcatttca 595  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48280765 agttctctttttgagttctgtgtctcctgatttcatttca 48280804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 57 - 210
Target Start/End: Original strand, 14336666 - 14336819
Alignment:
Q  57 ttttccaatcacaatatgaaaaggaaagttttggacatctttgttatgtaaacatgatggagatactatttttgtgttcaagattttggaagattattta 156  Q
    ||||||||| |||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14336666 ttttccaattacaatatgaaaatgaaagttttggatatctttgttatgtaatcatgatggagatactatttctgtgttcaagattttggaagattattta 14336765  T
Q  157 tagaacaaagcaacnnnnnnnagctagaacaatgcaagcattagttggtggatt 210  Q
    | || |||||||||       ||| |||||||||||||||||||||||||||||    
T  14336766 tcgagcaaagcaactttttttagcaagaacaatgcaagcattagttggtggatt 14336819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University