View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16723_low_2 (Length: 485)
Name: NF16723_low_2
Description: NF16723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16723_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 166 - 456
Target Start/End: Original strand, 31584392 - 31584682
Alignment:
| Q |
166 |
aattatcttctctctttatcaagagatatgaaaaggattgaaaaggattgaaggatgtttgaatcaagagggtccaaatccatcgtgccaagtagcaatt |
265 |
Q |
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| T |
31584392 |
aattatcttctctctttatcaagagatataaaaaggattgaaaaggattgaaggatgtttgaatcaagagggtccaaatccgtcgtgccaagtagcaatt |
31584491 |
T |
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| Q |
266 |
gcgctagtttcatcatatttttcataaggcaaaatatattnnnnnnnnnctcttaagccaaacatgaagtaagcaggaaaacaaaacaaagttacaatga |
365 |
Q |
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| T |
31584492 |
gcgctagtttcatcatatttttcataaggcaaaatatattaaaaaaaaactcttaagccaaacatgaagtaagcaggaaaacaaaacaaagttacaatga |
31584591 |
T |
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| Q |
366 |
tacaaacttaagtccaaaacaaatacaccccatcacaacaaaatcagagacagtcttgtagcttcatcatattgttaatgattcatttatg |
456 |
Q |
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| T |
31584592 |
tacaaacttaagtccaaaactaatacaccccatcacaacaaaatcagagacagtcttgtagtttcatcatattgttaatgattcatttatg |
31584682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 31584232 - 31584319
Alignment:
| Q |
13 |
aatagataacacttatacgcatgttccattatggccagcccaaacattcaaactatttaacatttggatcatcccaattcgaacatcc |
100 |
Q |
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| T |
31584232 |
aatagataacacttgtacgcatgttccattatcgccagcccaaacattcaaactatttaacatttggatcatcccaattcgaacatcc |
31584319 |
T |
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