View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16723_low_4 (Length: 326)
Name: NF16723_low_4
Description: NF16723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16723_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 26565418 - 26565119
Alignment:
| Q |
9 |
gtaaattatactgacaatacacgtccctaactgaaacttgaatgcaagttcatgataatgcttacaaatgcaacacaaagaacataaaactaccaagttg |
108 |
Q |
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| T |
26565418 |
gtaaattatgctgacaatacacgtccctaactgaaactcgaatgcaagttcatgataatgcttacaaatgcaacacaaagaacataaaactaccaagttg |
26565319 |
T |
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| Q |
109 |
agaacatctaaacatcgaagtttgaaaatatcccataacgaaacatgattgaacatctttgactaattattcggacccaaaagtgcgagaagaaaagccc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26565318 |
agaacatctaaacatcgaagtttgaaaatatcccataacgaaacatgattgaacatctttgactaattattcggacccaaaagtgcgagaagaaaagccc |
26565219 |
T |
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| Q |
209 |
tatagttgccagatgtttcagagtgaactgcatcattcaatgtcttcttatatttcttggcatattcagctttgatgtatttcatatcaatctcagtcct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26565218 |
tatagttgccagatgtttcagagtgaactgcatcattcaatgtcttcttatatttcttggcatattcagctttgatgtatttcatatcaatctcagtcct |
26565119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 155 - 308
Target Start/End: Complemental strand, 26559707 - 26559554
Alignment:
| Q |
155 |
gattgaacatctttgactaattattcggacccaaaagtgcgagaagaaaagccctatagttgccagatgtttcagagtgaactgcatcattcaatgtctt |
254 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26559707 |
gattgaacatctttgactaattattgggacccaaaagtgcgagaagaaaagccctatagttgccggatgtttcagagtgaactgcatcattcaatgtctt |
26559608 |
T |
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| Q |
255 |
cttatatttcttggcatattcagctttgatgtatttcatatcaatctcagtcct |
308 |
Q |
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| T |
26559607 |
cttatatttctttgcatattcagttttgatgtatttcatatcaatctcagtcct |
26559554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 149 - 308
Target Start/End: Complemental strand, 26553459 - 26553300
Alignment:
| Q |
149 |
aaacatgattgaacatctttgactaattattcggacccaaaagtgcgagaagaaaagccctatagttgccagatgtttcagagtgaactgcatcattcaa |
248 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| |
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| T |
26553459 |
aaacatgattgaacatctttgactagtgattcggacccaaaagtgcgagaagaaaatccctgtagttgcctgatgtttcagagtgaactgcatcattcag |
26553360 |
T |
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| Q |
249 |
tgtcttcttatatttcttggcatattcagctttgatgtatttcatatcaatctcagtcct |
308 |
Q |
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||||||||| |||||||| ||||||||||||||||| || | |||||||||||||||||| |
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| T |
26553359 |
tgtcttcttgtatttctttgcatattcagctttgatatactgcatatcaatctcagtcct |
26553300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 133 - 308
Target Start/End: Original strand, 50933475 - 50933650
Alignment:
| Q |
133 |
aaaatatcccataacgaaacatgattgaacatctttgactaattattcggacccaaaagtgcgagaagaaaagccctatagttgccagatgtttcagagt |
232 |
Q |
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| T |
50933475 |
aaaatatcccgaaatgaaacatgattgaacatctttgactaatgattgggacccaaaagtgcaagaagaaaagtcctgtagttgccagatgtttcagagt |
50933574 |
T |
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| Q |
233 |
gaactgcatcattcaatgtcttcttatatttcttggcatattcagctttgatgtatttcatatcaatctcagtcct |
308 |
Q |
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|||||||||||||||||||||| || |||||||| ||||||||||||||||| |||| |||||||||||||||||| |
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| T |
50933575 |
gaactgcatcattcaatgtctttttgtatttctttgcatattcagctttgatatattccatatcaatctcagtcct |
50933650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 50933403 - 50933447
Alignment:
| Q |
36 |
taactgaaacttgaatgcaagttcatgataatgcttacaaatgca |
80 |
Q |
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| T |
50933403 |
taactgaaactcgaatgcaagttcatgataatgcttacaaatgca |
50933447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 45506613 - 45506713
Alignment:
| Q |
181 |
ggacccaaaagtgcgagaagaaaagccctatagttgccagatgtttcagagtgaactgcatcattcaatgtcttcttatatttcttggcatattcagctt |
280 |
Q |
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||||| ||||||| ||||||||||||||| |||| |||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||| |
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| T |
45506613 |
ggacctaaaagtgagagaagaaaagccctgtagtggccagatgtttccgagtgaactgcatcattcagcgtcttcttgtatttctttagatattcagctt |
45506712 |
T |
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| Q |
281 |
t |
281 |
Q |
| |
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| |
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| T |
45506713 |
t |
45506713 |
T |
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