View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16723_low_5 (Length: 322)
Name: NF16723_low_5
Description: NF16723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16723_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 306
Target Start/End: Complemental strand, 48020948 - 48020634
Alignment:
| Q |
8 |
gaaaagaaactacaaccaatactcaaaa-gataattgaaaatgagacaacatgcaaagattgtgaacaatggacatgattatattggcatcaatattcta |
106 |
Q |
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| T |
48020948 |
gaaaagaaactacaaccaatactcaaaaagataattgaaaatgagacaacatgcaaagattgtgaacaatggacatgattatattggcatcaatattcta |
48020849 |
T |
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| Q |
107 |
cgtttggtgttccaacaattgaccatttgacccttgtaagaa-----------------caaaacaacataggattattaaggattaaggattcaggaca |
189 |
Q |
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| T |
48020848 |
cgtttggtgttccaacaattgaccatttgacccttgtaagaacaaattaatccaacaaacaaaacaacataggattattaaggattaagga--caataga |
48020751 |
T |
|
| Q |
190 |
atagnnnnnnncaaagaagtagtgggagtattggaattaggagtaccaaccaaacaaaccataatgacacatttctcatttgcaaaaaacatctccttat |
289 |
Q |
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| T |
48020750 |
aaaagacaaaacaaagaagtagtggtagtattggaattaggagtaccaaccaaacaaaccataatgacacatttctcatttgcaaaaaacatctccttat |
48020651 |
T |
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| Q |
290 |
agtcacaacgttcctgc |
306 |
Q |
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| T |
48020650 |
agtcacaacgttcctgc |
48020634 |
T |
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