View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16724_high_1 (Length: 592)

Name: NF16724_high_1
Description: NF16724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16724_high_1
NF16724_high_1
[»] chr1 (1 HSPs)
chr1 (1-592)||(4410617-4411208)


Alignment Details
Target: chr1 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Original strand, 4410617 - 4411208
Alignment:
Q  1 aacttaacgaatctcgcttatagttcctcgaattgtagcaatgagctttcactaagtcttgcaacatctccaacttcaggtcaatgctcagagattagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4410617 aacttaacgaatctcgcttatagttcctcgaattgtagcaatgagctttcactaagtcttgcaacatctccaacttcagttcaatgctcagagattagtt 4410716  T
Q  101 gttcagacttaactcatagcatgaatggaacaagatcaggtttggaacaagcctcatgtagtagtatggaactttctatgagtttagggaatgataaaca 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4410717 gttctgacttaactcatagcatgaatggaacaagatcaggtttggaacaagcctcatgtagtagtatggaactttctatgagtttagggaatgataaaca 4410816  T
Q  201 tgtcaagttttcgcctgcaatactaggatcaagataccttgctgtaattcaggaaatacttgttcaaattgcaacattttcatttgaaaatcttgatgag 300  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4410817 tgtcaagttttcgcccgcaatattaggatcaagataccttgctgtaattcaggaaatacttgttcaaattgcaacattttcatttgaaaatcttgatgag 4410916  T
Q  301 ataaactattccggttctggtgttagaggccgaggaaataaatcaacttcgttgaacacagccaagcgaaggataggaataagtcgcgacgagagtccta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||    
T  4410917 ataaactattccggttctggtgttagaggccgaggaaataaatcaacttcgtcaaacacaaccaagcgaaggataggaataaatcgcgacgagagtccta 4411016  T
Q  401 tgtcagaagcttatgctgattcttcattgcaaaggcatgctgttgaatcaaagcaatctcaactcttgatgcttctacagatggtacattgctaaccact 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411017 tgtcagaagcttatgctgattcttcattgcaaaggcatgctgttgaatcaaagcaatctcaactcttgatgcttctacagatggtacattgctaaccact 4411116  T
Q  501 tagattacattacattcatttggttttcgtaaaaccgtttacggtcctgattgcgttagtatatgtctgctggtttcactcttgaacatgga 592  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411117 tagattacattacattcatttggttttcgtaaaaccgtttatggtcctgattgcgttagtatatgtctgctggtttcactcttgaacatgga 4411208  T

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