View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16724_high_10 (Length: 291)
Name: NF16724_high_10
Description: NF16724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16724_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 43255445 - 43255701
Alignment:
| Q |
19 |
aagatgctgaattattctagttcttgtaaatgtcatttcttacaaggccatatcatgaaacatgctcacaggatgccaagacaagaaagtgaagaaaagg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43255445 |
aagatgctgaattattctagttcttgtaaatgtcatttcttacaaggccacatcatgaaacatgctcacaggatgctaagacaagaaagtgaagaaaagg |
43255544 |
T |
|
| Q |
119 |
tggttgagnnnnnnnggtaataattataacttacagcaaccaacaagagcaaagaaaagaaaagagcatatatataatacattcatttagtggaacttga |
218 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255545 |
tggttgagtttttttggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataatacattcatttagtggaacttga |
43255644 |
T |
|
| Q |
219 |
gactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255645 |
gactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggt |
43255701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 43258711 - 43258967
Alignment:
| Q |
19 |
aagatgctgaattattctagttcttgtaaatgtcatttcttacaaggccatatcatgaaacatgctcacaggatgccaagacaagaaagtgaagaaaagg |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
43258711 |
aagatgctgaatatttctagttcttgtaaatgtcatttcttacaaggccacatcatgaaacatgctcacaagatgctaagacaagaaagtgaagaaaagg |
43258810 |
T |
|
| Q |
119 |
tggttgagnnnnnnnggtaataattataacttacagcaaccaacaagagcaaagaaaagaaaagagcatatatataatacattcatttagtggaacttga |
218 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43258811 |
tggttgagtttttttggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataatacattcatttagtggaacttga |
43258910 |
T |
|
| Q |
219 |
gactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43258911 |
gactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggt |
43258967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 43247615 - 43247704
Alignment:
| Q |
186 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
43247615 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtttgaagggtcagccaaatgatttaagaagttttggt |
43247704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 43254090 - 43254144
Alignment:
| Q |
186 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43254090 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
43254144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 43233964 - 43234012
Alignment:
| Q |
227 |
aagatgttgttgttgacagggtcagccaaatgatctaagaggttttggt |
275 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
43233964 |
aagatgttgttgttgaaagggtcagccaaatgatccaagaggttttggt |
43234012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University