View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16724_high_12 (Length: 254)
Name: NF16724_high_12
Description: NF16724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16724_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 33491032 - 33490825
Alignment:
| Q |
1 |
agactcccacaacagcaccaaattcctctaaagaaattattacatgctgatacagtttcaaacaaacaaagattacataaaaggaatctacaagagtttt |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
33491032 |
agactcccacaacagcaccaaattcctgtaaagaaattattacatgctgatacagtttcaaacgagcaaagattacataaaaggaatctacaagagtttt |
33490933 |
T |
|
| Q |
101 |
gagtacaaaaacatcacaatatatcaatactctactttttatgagttgcaaataaagcaccgtaattggttcattcatatttgtgatgtttagcgtttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33490932 |
gagtacaaaaacatcacaatatatcaatactctactttttatgagttgcaaataaagctccgtaattggttcattcatatttgtgatgtttagcgtttct |
33490833 |
T |
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| Q |
201 |
caagtacc |
208 |
Q |
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|||||||| |
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| T |
33490832 |
caagtacc |
33490825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 28812756 - 28812845
Alignment:
| Q |
1 |
agactcccacaacagcaccaaattcctctaaagaaattattacatgctgatacagtttcaaacaaacaaagattacataaaaggaatcta |
90 |
Q |
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||||||||||||||||||||| | ||| ||||||| || |||||| |||||| ||||| |||| |||||||| |||||||||| |||| |
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| T |
28812756 |
agactcccacaacagcaccaattccctgcaaagaaactactacatgatgatactgtttcgaacatacaaagatcgcataaaaggattcta |
28812845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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